3d3o: Difference between revisions

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{{Seed}}
[[Image:3d3o.png|left|200px]]


<!--
==Crystal structure of the effector domain of the putative transcriptional regulator IclR from Acinetobacter sp. ADP1==
The line below this paragraph, containing "STRUCTURE_3d3o", creates the "Structure Box" on the page.
<StructureSection load='3d3o' size='340' side='right'caption='[[3d3o]], [[Resolution|resolution]] 2.46&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3d3o]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baylyi_ADP1 Acinetobacter baylyi ADP1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D3O FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.46&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3d3o|  PDB=3d3o  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d3o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3o OCA], [https://pdbe.org/3d3o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d3o RCSB], [https://www.ebi.ac.uk/pdbsum/3d3o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d3o ProSAT], [https://www.topsan.org/Proteins/MCSG/3d3o TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of the effector domain of the putative transcriptional regulator IclR from Acinetobacter sp. ADP1===
== Function ==
 
[https://www.uniprot.org/uniprot/Q6FBA6_ACIAD Q6FBA6_ACIAD]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3D3O is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Acinetobacter_sp._adp1 Acinetobacter sp. adp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3O OCA].  
Check<jmol>
[[Category: Acinetobacter sp. adp1]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d3/3d3o_consurf.spt"</scriptWhenChecked>
[[Category: Joachimiak, A.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Kim, Y.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
  </jmolCheckbox>
[[Category: Shackelford, G.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d3o ConSurf].
[[Category: Alpha-beta structure]]
<div style="clear:both"></div>
[[Category: Effector domain]]
__TOC__
[[Category: Mcsg]]
</StructureSection>
[[Category: Midwest center for structural genomic]]
[[Category: Acinetobacter baylyi ADP1]]
[[Category: Protein structure initiative]]
[[Category: Large Structures]]
[[Category: Psi-2]]
[[Category: Joachimiak A]]
[[Category: Structural genomic]]
[[Category: Kim Y]]
[[Category: Transcription regulator]]
[[Category: Shackelford G]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 19:25:38 2008''

Latest revision as of 08:56, 30 October 2024

Crystal structure of the effector domain of the putative transcriptional regulator IclR from Acinetobacter sp. ADP1

3d3o, resolution 2.46Å

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