2gfq: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(10 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:2gfq.png|left|200px]]


<!--
==Structure of Protein of Unknown Function PH0006 from Pyrococcus horikoshii==
The line below this paragraph, containing "STRUCTURE_2gfq", creates the "Structure Box" on the page.
<StructureSection load='2gfq' size='340' side='right'caption='[[2gfq]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2gfq]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GFQ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_2gfq|  PDB=2gfq  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gfq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gfq OCA], [https://pdbe.org/2gfq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gfq RCSB], [https://www.ebi.ac.uk/pdbsum/2gfq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gfq ProSAT], [https://www.topsan.org/Proteins/MCSG/2gfq TOPSAN]</span></td></tr>
 
</table>
===Structure of Protein of Unknown Function PH0006 from Pyrococcus horikoshii===
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
2GFQ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFQ OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/2gfq_consurf.spt"</scriptWhenChecked>
[[Category: Pyrococcus horikoshii]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Cuff, M E.]]
  </jmolCheckbox>
[[Category: Edwards, A.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gfq ConSurf].
[[Category: Gorodichtchenskaia, E.]]
<div style="clear:both"></div>
[[Category: Joachimiak, A.]]
__TOC__
[[Category: MCSG, Midwest Center for Structural Genomics.]]
</StructureSection>
[[Category: Savchenko, A.]]
[[Category: Large Structures]]
[[Category: Skarina, T.]]
[[Category: Pyrococcus horikoshii OT3]]
[[Category: Mcsg]]
[[Category: Cuff ME]]
[[Category: Midwest center for structural genomic]]
[[Category: Edwards A]]
[[Category: Ph0006]]
[[Category: Gorodichtchenskaia E]]
[[Category: Protein structure initiative]]
[[Category: Joachimiak A]]
[[Category: Psi]]
[[Category: Savchenko A]]
[[Category: Pyrococcus horikoshii]]
[[Category: Skarina T]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 19:43:15 2008''
Retrieved from "https://proteopedia.org/2gfq"