3dnx: Difference between revisions

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{{Seed}}
[[Image:3dnx.png|left|200px]]


<!--
==SPO1766 protein of unknown function from Silicibacter pomeroyi.==
The line below this paragraph, containing "STRUCTURE_3dnx", creates the "Structure Box" on the page.
<StructureSection load='3dnx' size='340' side='right'caption='[[3dnx]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dnx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_700808 Atcc 700808]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DNX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DNX FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-->
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3dnx|  PDB=3dnx  |  SCENE=  }}
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SPO1766 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=89184 ATCC 700808])</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dnx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dnx OCA], [https://pdbe.org/3dnx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dnx RCSB], [https://www.ebi.ac.uk/pdbsum/3dnx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dnx ProSAT], [https://www.topsan.org/Proteins/MCSG/3dnx TOPSAN]</span></td></tr>
===SPO1766 protein of unknown function from Silicibacter pomeroyi.===
</table>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
3DNX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Silicibacter_pomeroyi Silicibacter pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DNX OCA].  
  <jmolCheckbox>
[[Category: Silicibacter pomeroyi]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dn/3dnx_consurf.spt"</scriptWhenChecked>
[[Category: Single protein]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Clancy, S.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Joachimiak, A.]]
  </jmolCheckbox>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dnx ConSurf].
[[Category: Mulligan, R.]]
<div style="clear:both"></div>
[[Category: Osipiuk, J.]]
__TOC__
</StructureSection>
[[Category: Atcc 700808]]
[[Category: Large Structures]]
[[Category: Clancy, S]]
[[Category: Joachimiak, A]]
[[Category: Structural genomic]]
[[Category: Mulligan, R]]
[[Category: Osipiuk, J]]
[[Category: Apc88088]]
[[Category: Apc88088]]
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: Protein of unknown function]]
[[Category: Protein of unknown function]]
[[Category: Protein structure initiative]]
[[Category: PSI, Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
[[Category: Unknown function]]
[[Category: Unknown function]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 19:50:43 2008''
Retrieved from "https://proteopedia.org/3dnx"