2z1m: Difference between revisions

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{{Seed}}
[[Image:2z1m.png|left|200px]]


<!--
==Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5==
The line below this paragraph, containing "STRUCTURE_2z1m", creates the "Structure Box" on the page.
<StructureSection load='2z1m' size='340' side='right'caption='[[2z1m]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2z1m]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z1M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z1M FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
{{STRUCTURE_2z1m|  PDB=2z1m  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z1m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z1m OCA], [https://pdbe.org/2z1m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z1m RCSB], [https://www.ebi.ac.uk/pdbsum/2z1m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z1m ProSAT], [https://www.topsan.org/Proteins/RSGI/2z1m TOPSAN]</span></td></tr>
 
</table>
===Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5===
== Function ==
 
[https://www.uniprot.org/uniprot/O67175_AQUAE O67175_AQUAE] Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose (By similarity).[HAMAP-Rule:MF_00955]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2Z1M is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z1M OCA].  
Check<jmol>
[[Category: Aquifex aeolicus]]
  <jmolCheckbox>
[[Category: GDP-mannose 4,6-dehydratase]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z1/2z1m_consurf.spt"</scriptWhenChecked>
[[Category: Single protein]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Kuramitsu, S.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Niwa, H.]]
  </jmolCheckbox>
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z1m ConSurf].
[[Category: Yokoyama, S.]]
<div style="clear:both"></div>
[[Category: Lyase]]
__TOC__
[[Category: National project on protein structural and functional analyse]]
</StructureSection>
[[Category: Nppsfa]]
[[Category: Aquifex aeolicus VF5]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Large Structures]]
[[Category: Rsgi]]
[[Category: Kuramitsu S]]
[[Category: Short-chain dehydrogenase/reductase]]
[[Category: Niwa H]]
[[Category: Structural genomic]]
[[Category: Yokoyama S]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 21:57:13 2008''

Latest revision as of 13:55, 13 March 2024

Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5

2z1m, resolution 2.00Å

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