2rdp: Difference between revisions

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{{Seed}}
[[Image:2rdp.png|left|200px]]


<!--
==The structure of a MarR family protein from Bacillus stearothermophilus==
The line below this paragraph, containing "STRUCTURE_2rdp", creates the "Structure Box" on the page.
<StructureSection load='2rdp' size='340' side='right'caption='[[2rdp]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2rdp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RDP FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
{{STRUCTURE_2rdp|  PDB=2rdp |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rdp OCA], [https://pdbe.org/2rdp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rdp RCSB], [https://www.ebi.ac.uk/pdbsum/2rdp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rdp ProSAT], [https://www.topsan.org/Proteins/MCSG/2rdp TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/D0VWY6_GEOSE D0VWY6_GEOSE]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rdp_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rdp ConSurf].
<div style="clear:both"></div>


===The structure of a MarR family protein from Bacillus stearothermophilus===
==See Also==
 
*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDP OCA].
[[Category: Geobacillus stearothermophilus]]
[[Category: Cuff, M E.]]
[[Category: Large Structures]]
[[Category: Dementieva, I.]]
[[Category: Cuff ME]]
[[Category: Duggan, E.]]
[[Category: Dementieva I]]
[[Category: Joachimiak, A.]]
[[Category: Duggan E]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Joachimiak A]]
[[Category: Moy, S.]]
[[Category: Moy S]]
[[Category: Marr]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: Pfam pf01047]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
[[Category: Transcriptional regulator]]
[[Category: Winged-helix dna binding motif]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 22:07:19 2008''
Retrieved from "https://proteopedia.org/2rdp"