3bdv: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(10 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3bdv.png|left|200px]]


<!--
==Crystal structure of a putative yden-like hydrolase (eca3091) from pectobacterium atrosepticum scri1043 at 1.66 A resolution==
The line below this paragraph, containing "STRUCTURE_3bdv", creates the "Structure Box" on the page.
<StructureSection load='3bdv' size='340' side='right'caption='[[3bdv]], [[Resolution|resolution]] 1.66&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3bdv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pectobacterium_atrosepticum_SCRI1043 Pectobacterium atrosepticum SCRI1043]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BDV FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.66&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3bdv|  PDB=3bdv  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bdv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bdv OCA], [https://pdbe.org/3bdv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bdv RCSB], [https://www.ebi.ac.uk/pdbsum/3bdv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bdv ProSAT], [https://www.topsan.org/Proteins/JCSG/3bdv TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of YdeN-like protein of unknown function (DUF1234) (YP_051181.1) from Erwinia carotovora subsp. atroseptica SCRI1043 at 1.66 A resolution===
== Function ==
 
[https://www.uniprot.org/uniprot/Q6D2K4_PECAS Q6D2K4_PECAS]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3BDV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pectobacterium_atrosepticum_scri1043 Pectobacterium atrosepticum scri1043]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDV OCA].  
Check<jmol>
[[Category: Pectobacterium atrosepticum scri1043]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/3bdv_consurf.spt"</scriptWhenChecked>
[[Category: JCSG, Joint Center for Structural Genomics.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Jcsg]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Joint center for structural genomic]]
  </jmolCheckbox>
[[Category: Protein structure initiative]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bdv ConSurf].
[[Category: Psi-2]]
<div style="clear:both"></div>
[[Category: Structural genomic]]
__TOC__
[[Category: Unknown function]]
</StructureSection>
[[Category: Yp_051181 1]]
[[Category: Large Structures]]
 
[[Category: Pectobacterium atrosepticum SCRI1043]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 03:32:57 2008''

Latest revision as of 01:37, 21 November 2024

Crystal structure of a putative yden-like hydrolase (eca3091) from pectobacterium atrosepticum scri1043 at 1.66 A resolution

3bdv, resolution 1.66Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=3bdv&oldid=4271396"