1sqf: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
New page: left|200px<br /><applet load="1sqf" size="450" color="white" frame="true" align="right" spinBox="true" caption="1sqf, resolution 2.10Å" /> '''The crystal structur...
 
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(13 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1sqf.gif|left|200px]]<br /><applet load="1sqf" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1sqf, resolution 2.10&Aring;" />
'''The crystal structure of E. coli Fmu binary complex with S-Adenosylmethionine at 2.1 A resolution'''<br />


==Overview==
==The crystal structure of E. coli Fmu binary complex with S-Adenosylmethionine at 2.1 A resolution==
The crystal structure of E. coli Fmu, determined at 1.65 A resolution for, the apoenzyme and 2.1 A resolution in complex with AdoMet, is the first, representative of the 5-methylcytosine RNA methyltransferase family that, includes the human nucleolar proliferation-associated protein p120. Fmu, contains three subdomains which share structural homology to DNA m(5)C, methyltransferases and two RNA binding protein families. In the binary, complex, the AdoMet cofactor is positioned within the active site near a, novel arrangement of two conserved cysteines that function in cytosine, methylation. The site is surrounded by a positively charged cleft large, enough to bind its unique target stem loop within 16S rRNA. Docking of, this stem loop RNA into the structure followed by molecular mechanics, shows that the Fmu structure is consistent with binding to the folded RNA, substrate.
<StructureSection load='1sqf' size='340' side='right'caption='[[1sqf]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
 
== Structural highlights ==
==About this Structure==
<table><tr><td colspan='2'>[[1sqf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SQF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SQF FirstGlance]. <br>
1SQF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with SAM as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1SQF OCA].  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
==Reference==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sqf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sqf OCA], [https://pdbe.org/1sqf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sqf RCSB], [https://www.ebi.ac.uk/pdbsum/1sqf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sqf ProSAT]</span></td></tr>
The first structure of an RNA m5C methyltransferase, Fmu, provides insight into catalytic mechanism and specific binding of RNA substrate., Foster PG, Nunes CR, Greene P, Moustakas D, Stroud RM, Structure. 2003 Dec;11(12):1609-20. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=14656444 14656444]
</table>
== Function ==
[https://www.uniprot.org/uniprot/RSMB_ECOLI RSMB_ECOLI] Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.<ref>PMID:10194318</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sq/1sqf_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sqf ConSurf].
<div style="clear:both"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Foster, P.G.]]
[[Category: Foster PG]]
[[Category: Greene, P.]]
[[Category: Greene P]]
[[Category: Moustakas, D.]]
[[Category: Moustakas D]]
[[Category: Nunes, C.R.]]
[[Category: Nunes CR]]
[[Category: Stroud, R.M.]]
[[Category: Stroud RM]]
[[Category: SAM]]
[[Category: methyltransferase-fold]]
[[Category: mixed beta sheet]]
[[Category: rna-binding domain]]
[[Category: rossmann-fold]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 02:34:09 2007''
Retrieved from "https://proteopedia.org/1sqf"