2yxe: Difference between revisions

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{{Seed}}
[[Image:2yxe.png|left|200px]]


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==Crystal structure of L-isoaspartyl protein carboxyl methyltranferase==
The line below this paragraph, containing "STRUCTURE_2yxe", creates the "Structure Box" on the page.
<StructureSection load='2yxe' size='340' side='right'caption='[[2yxe]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2yxe]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus jannaschii DSM 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YXE FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
{{STRUCTURE_2yxe|  PDB=2yxe  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yxe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yxe OCA], [https://pdbe.org/2yxe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yxe RCSB], [https://www.ebi.ac.uk/pdbsum/2yxe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yxe ProSAT], [https://www.topsan.org/Proteins/RSGI/2yxe TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of L-isoaspartyl protein carboxyl methyltranferase===
== Function ==
 
[https://www.uniprot.org/uniprot/PIMT_METJA PIMT_METJA] Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins (By similarity).
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2YXE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXE OCA].  
Check<jmol>
[[Category: Methanocaldococcus jannaschii]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/2yxe_consurf.spt"</scriptWhenChecked>
[[Category: Bessho, Y.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Padmanabhan, B.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
  </jmolCheckbox>
[[Category: Yokoyama, S.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yxe ConSurf].
[[Category: Alpha/beta/alpha sandwich structure]]
<div style="clear:both"></div>
[[Category: National project on protein structural and functional analyse]]
__TOC__
[[Category: Nppsfa]]
</StructureSection>
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Large Structures]]
[[Category: Rossman-type fold]]
[[Category: Methanocaldococcus jannaschii DSM 2661]]
[[Category: Rsgi]]
[[Category: Bessho Y]]
[[Category: Structural genomic]]
[[Category: Padmanabhan B]]
[[Category: Transferase]]
[[Category: Yokoyama S]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 06:28:16 2008''
Retrieved from "https://proteopedia.org/2yxe"