2dm9: Difference between revisions

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{{Seed}}
[[Image:2dm9.png|left|200px]]


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==Crystal Structure of PH1978 from Pyrococcus horikoshii OT3==
The line below this paragraph, containing "STRUCTURE_2dm9", creates the "Structure Box" on the page.
<StructureSection load='2dm9' size='340' side='right'caption='[[2dm9]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2dm9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DM9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DM9 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dm9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dm9 OCA], [https://pdbe.org/2dm9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dm9 RCSB], [https://www.ebi.ac.uk/pdbsum/2dm9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dm9 ProSAT], [https://www.topsan.org/Proteins/RSGI/2dm9 TOPSAN]</span></td></tr>
{{STRUCTURE_2dm9| PDB=2dm9 |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/VATE_PYRHO VATE_PYRHO] Produces ATP from ADP in the presence of a proton gradient across the membrane (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/2dm9_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dm9 ConSurf].
<div style="clear:both"></div>


===Crystal Structure of PH1978 from Pyrococcus horikoshii OT3===
==See Also==
 
*[[ATPase 3D structures|ATPase 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_17189637}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 17189637 is the PubMed ID number.
[[Category: Pyrococcus horikoshii OT3]]
-->
[[Category: Kunishima N]]
{{ABSTRACT_PUBMED_17189637}}
[[Category: Lokanath NK]]
 
==About this Structure==
2DM9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DM9 OCA].
 
==Reference==
Dimeric core structure of modular stator subunit E of archaeal H+ -ATPase., Lokanath NK, Matsuura Y, Kuroishi C, Takahashi N, Kunishima N, J Mol Biol. 2007 Feb 23;366(3):933-44. Epub 2006 Dec 9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17189637 17189637]
[[Category: Pyrococcus horikoshii]]
[[Category: Single protein]]
[[Category: Kunishima, N.]]
[[Category: Lokanath, N K.]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: A-atpase]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Rsgi]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 07:29:42 2008''
Retrieved from "https://proteopedia.org/2dm9"