3dpy: Difference between revisions

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{{Seed}}
[[Image:3dpy.jpg|left|200px]]


<!--
==Protein farnesyltransferase complexed with FPP and caged TKCVIM substrate==
The line below this paragraph, containing "STRUCTURE_3dpy", creates the "Structure Box" on the page.
<StructureSection load='3dpy' size='340' side='right'caption='[[3dpy]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dpy]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DPY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DPY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=FPP:FARNESYL+DIPHOSPHATE'>FPP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_3dpy| PDB=3dpy |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dpy OCA], [https://pdbe.org/3dpy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dpy RCSB], [https://www.ebi.ac.uk/pdbsum/3dpy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dpy ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/FNTA_RAT FNTA_RAT] Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Through RAC1 prenylation and activation may positively regulate neuromuscular junction development downstream of MUSK (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/3dpy_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dpy ConSurf].
<div style="clear:both"></div>


===Protein farnesyltransferase complexed with FPP and caged TKCVIM substrate===
==See Also==
 
*[[Farnesyltransferase 3D structures|Farnesyltransferase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
3DPY is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DPY OCA].
[[Category: Large Structures]]
[[Category: Protein complex]]
[[Category: Protein farnesyltransferase]]
[[Category: Rattus norvegicus]]
[[Category: Rattus norvegicus]]
[[Category: Beese, L S.]]
[[Category: Beese LS]]
[[Category: Hast, M A.]]
[[Category: Hast MA]]
[[Category: Farnesyltransferase]]
[[Category: Fpp]]
[[Category: Ftase]]
[[Category: Geranylgeranyltransferase]]
[[Category: Metal-binding]]
[[Category: Pft]]
[[Category: Phosphoprotein]]
[[Category: Prenylation]]
[[Category: Prenyltransferase]]
[[Category: Protein prenylation]]
[[Category: Protein prenyltransferase]]
[[Category: Transferase]]
[[Category: Zinc]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct  1 21:43:59 2008''
Retrieved from "https://proteopedia.org/3dpy"