3elk: Difference between revisions

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[[Image:3elk.jpg|left|200px]]


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==Crystal structure of putative transcriptional regulator TA0346 from Thermoplasma acidophilum==
The line below this paragraph, containing "STRUCTURE_3elk", creates the "Structure Box" on the page.
<StructureSection load='3elk' size='340' side='right'caption='[[3elk]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3elk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"thermoplasma_acidophila"_(sic)_darland_et_al._1970 "thermoplasma acidophila" (sic) darland et al. 1970]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ELK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ELK FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-->
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene></td></tr>
{{STRUCTURE_3elk|  PDB=3elk  |  SCENE=  }}
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Ta0346 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2303 "Thermoplasma acidophila" (sic) Darland et al. 1970])</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3elk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3elk OCA], [https://pdbe.org/3elk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3elk RCSB], [https://www.ebi.ac.uk/pdbsum/3elk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3elk ProSAT], [https://www.topsan.org/Proteins/MCSG/3elk TOPSAN]</span></td></tr>
===Crystal structure of putative transcriptional regulator TA0346 from Thermoplasma acidophilum===
</table>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
3ELK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ELK OCA].  
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/el/3elk_consurf.spt"</scriptWhenChecked>
[[Category: Thermoplasma acidophilum]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Chruszcz, M.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Edwards, A.]]
  </jmolCheckbox>
[[Category: Egorova, O.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3elk ConSurf].
[[Category: Evdokimova, E.]]
<div style="clear:both"></div>
[[Category: Joachimiak, A.]]
__TOC__
[[Category: MCSG, Midwest Center for Structural Genomics.]]
</StructureSection>
[[Category: Minor, W.]]
[[Category: Large Structures]]
[[Category: Saskova, K Grantz.]]
[[Category: Chruszcz, M]]
[[Category: Savchenko, A.]]
[[Category: Edwards, A]]
[[Category: Egorova, O]]
[[Category: Evdokimova, E]]
[[Category: Joachimiak, A]]
[[Category: Structural genomic]]
[[Category: Minor, W]]
[[Category: Saskova, K Grantz]]
[[Category: Savchenko, A]]
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: PSI, Protein structure initiative]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
[[Category: Transcription regulator]]
[[Category: Transcription regulator]]
[[Category: Transcriptional regulator]]
[[Category: Transcriptional regulator]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct  1 22:28:31 2008''
Retrieved from "https://proteopedia.org/3elk"