User:Wayne Decatur: Difference between revisions

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Research Associate in the Department of Biochemistry and Molecular Biology at the University of ~~Massachusetts at Amherst~~.

[[Image:Me cropped smaller at Eileen Jewel performance 11-9-08..jpg|right|300px|Wayne Decatur in front row of Eilen Jewel private performance November 9th, 2008 at Williamsburg, MA Grange Hall]]

==Wayne Decatur==

<!--

Protopedia recognizes and but most times not necessary.

-->

Research Associate in the Department of Biochemistry and Molecular Biology at the SUNY Upstate Medical University.

'''Member of the [[Proteopedia:About#The Proteopedia Team|Proteopedia Editorial Board]]'''.

Interests:

Project Jupyter Distinguished Contributor

small RNAs; catalytic RNAs; the Ribosome

Member of the Bioinformatics Virtual Coordination Network Instructor Consortium

Interests:

small RNAs and their associated ribonucleoprotein complexes; the Ribosome; RNA modification; catalytic RNAs; homing endonucleases, group I introns; leucine-rich repeats; hormones and their receptors.

[http://fomightez.github.io/ Wayne at Github]

[https://pubmed.ncbi.nlm.nih.gov/?term=decatur-w Wayne's publications listed at the the U.S. National Library of Medicine's PubMed database]

Past affiliations:

*Cornell University

*University of Massachusetts at Amherst

*University of New Hampshire

email: {{Template:Decatur_email}}

==Some Proteopedia Pages to Which I've Contributed==

===Molecules: Topic Pages===

*[[Ribosome|The Ribosome]]

*[[Large Ribosomal Subunit of Haloarcula|Large Ribosomal Subunit of Haloarcula marismortui]]

*[[User:Wayne Decatur/Interactions between Antibiotics and the Ribosome|Interactions between Antibiotics and the Ribosome]]

*[[User:Wayne_Decatur/Haloarcula Large Ribosomal Subunit With Azithromycin|Azithromycin bound to the Large Ribosomal Subunit of Haloarcula marismortui]]

*[[Suppression of RNA Silencing by Viruses]]

*[[Plant Viral Protein p19 Suppression of RNA Silencing]]

*[[Tomato aspermy virus protein 2b Suppression of RNA Silencing]]

*[[Flock house virus B2 protein Suppression of RNA Silencing]]

*[[Green Fluorescent Protein]]

*[[Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa|DEAD-box helicase protein Vasa]]

*[[RecG Bound to Three-Way DNA Junction|RecG in complex with a synthetic three-way DNA junction resembling a stalled replication fork]]

*[[LepA|Escherichia coli LepA, the ribosomal back translocase]]

*[[Pore forming toxin, α-hemolysin|The Pore Forming Toxin, α-hemolysin]]

*[[Glutamate receptor (GluA2)|The Glutamate Receptor (GluA2)]]

*[[Luciferase]]

*[[Citrate Synthase]]

*[[Lamprey Variable Lymphocyte Receptor]]

*[[Leucine-rich repeat|Leucine-Rich Repeat Proteins]]

*[[Toll-like Receptors]]

*[[Hormone]]

*[[Human Follicle-Stimulating Hormone Complexed with its Receptor]]

*[[G protein-coupled receptor]]

*[[Forkhead box protein M1]]

*[[Kink-turn motif]]

*[[Pseudouridine]]

*[[Zika virus subgenomic flaviviral RNA]]

*[[RNase P]]

*[[yeast RNase P]]

*[[Cubic Diamond Lattice Metal-Organic Framework]]

*[[Catalytic Molybdenum Metal-Organic Framework]]

===Topic Pages - Structural Bioinformatics===

*[[About Macromolecular Structure]]

*[[Alternate locations]]

*[[altloc]]

*[[Cation-pi interactions]]

*[[Complexes]]

*[[Cystine]]

*[[Getting Unremediated PDB Files]]

*[[Net charge]]

*[[Pseudoenzyme]]

*[[Interface analysis servers]]

*[[Isoelectric point]]

*[[Standard Residues]] and [[Non-Standard Residues]]

*[[Reentrant loops]]

*[[Web servers for convenient generation of publication-quality figures for molecular views]]

===Topic Pages - Education===

* [[Teaching Strategies Using Proteopedia]]

* [[Teaching Scenes, Tutorials, and Educators' Pages]]

* [[Proteopedia:Practical Guide to Advanced Proteopedia Authoring and Its Use in Teaching]]

** ''Link above is the online version of Part C of a book chapter entitled '''Publishing in Proteopedia: The Guide''' by [[User:Jaime Prilusky|Jaime Prilusky]], [[User:Wayne Decatur|Wayne Decatur]], and [[User:Eric Martz|Eric Martz]]."

**'''Full Reference''': ''Jaime Prilusky, Wayne Decatur, Eric Martz. Publishing in Proteopedia: The Guide, Advancing Methods for Biomolecular Crystallography. ''In'' NATO Science for Peace and Security Series A: Chemistry and Biology 2013, pp 277-295 [[http://dx.doi.org/10.1007/978-94-007-6232-9_24 doi:10.1007/978-94-007-6232-9_24]]''

* [[High school teachers' resources]]

===Meta Pages===

* [[Help:Editing]]

* [[Proteopedia:How to Make a Page]]

* [[Proteopedia:About]]

* [[Proteopedia:Policy]]

* [[Proteopedia:Facebook]]

* [[Proteopedia:Twitter]]

* [[Proteopedia:Macros]]

* [[Proteopedia:DIY:Macros]]

* [[Proteopedia:Cookbook]]

* [[Combine Proteopedia scenes with inline JSmol scripting]]

* [[Proteopedia:DIY:Templates]]

* [[Jmol]]

* [[DRuMS]]

* [[Wanted pages]]

* [[Pages needing expansion‎]]

* [[Pages needing improvement‎]]

==Workshops, Lectures, and Seminars==

*[[User:Wayne Decatur/ GS647-021 Structuring against Coronavirus 2020| UPSTATE MEDICAL GS647-021 Nanocourse: Structuring against Coronavirus (April-May) 2020]]

*[[User:Wayne Decatur/UNH BCHEM833 Structural Analysis Workshop Session Fall 2012|UNH BIOCHEM833 Structural Analysis for Non-Structural Biologists Workshop Session Fall Semester (November 8th) 2012]]

*[[User:Wayne Decatur/UNH BCHEM833 Structural Proteomics Introductory Lecture Fall 2012|UNH BIOCHEM833 Structural Analysis for Non-Structural Biologists Introductory Lecture Fall Semester (October 25th) 2012]]

*[[User:Wayne Decatur/NASCE2011|Workshop for the NASCE Meeting at the University of Michigan, Ann Arbor, MI July 13 2011]]

*[[User:Wayne Decatur/UNH CME Workshop March 11 2011|Workshop for CME at the University of New Hampshire, Durham, NH March 11 2011]]

*[[User:Wayne Decatur/UNH Seminar Feb 1st 2011|Seminar at the University of New Hampshire, Durham, NH Feb 1st 2011]]

*[[User:Wayne Decatur/Biochem642 Molecular Visualization 2010 Fall Sessions|Biochem642 Molecular Visualization 2010 Fall Sessions]]

*[[User:Wayne Decatur/Biochem642 Molecular Visualization Sessions|Biochem642 Molecular Visualization 2009 Fall Sessions]]

*[[User:Wayne Decatur/Chem791A Work Session|Proteopedia Work Session for Chem 791A-Biomolecular Structure]]

==Personal Quicklinks==

===All Protected Pages===

*[http://proteopedia.org/wiki/index.php?title=Special:Contributions&limit=500&contribs=user&target=Wayne+Decatur&namespace=2 Search for User:Wayne Decatur in User Namespace]

===Files Uploaded===

*[http://proteopedia.org/wiki/index.php?limit=100&title=Special%3AContributions&contribs=user&target=Wayne+Decatur&namespace=6&year=&month=-1 Files Uploaded by Wayne Decatur]

===Sandboxes===

*[[Sandbox1rpu]] working out configuration&isosurfaces&dots problems

*[[Sandbox2hvy]] test for dots in another file

* [[Sandbox CsrA]]

* [[Sandbox TestMultiSurface]]

===Protected Sandbox Pages===

*[[User:Wayne Decatur/Protected Sandbox Pages|My Protected Sandbox Pages]]

===Protected Topic Pages===

*[[User:Wayne_Decatur/Haloarcula Large Ribosomal Subunit]]

*[[User:Wayne_Decatur/Haloarcula Large Ribosomal Subunit With Azithromycin]]

*[[User:Wayne Decatur/Interactions between Antibiotics and the Ribosome]]

*[[User:Wayne Decatur/Suppression of RNA Silencing by Viruses]]

*[[User:Wayne Decatur/Plant Viral Protein p19 Suppression of RNA Silencing]]

*[[User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing]]

*[[User:Wayne Decatur/Flock house virus B2 protein Suppression of RNA Silencing]]

*[[User:Wayne Decatur/kink-turn motif]]

*[[User:Wayne Decatur/Teaching Proteopedia]]

*[[User:Wayne Decatur/Editing Getting Unremediated PDB Files]]

*[[User:Wayne Decatur/Moving Components or Parts of Structures]]

*[[User:Wayne Decatur/Generate Unfolded Structures]]

*[[User:Wayne Decatur/Alter Disulfide Bonds in a Structure ]]

*[[User:Wayne Decatur/4ay9 pymol]]

*[[User:Wayne Decatur/Hsp90 Structures with client proteins]]

*[[User:Wayne Decatur/Gal 4]]

*[[User:Wayne Decatur/mof_dev]]

*[[User:Wayne Decatur/Homology Modeling]]

*[[User:Wayne Decatur/Sequence analysis tools]]

*[[User:Wayne Decatur/Structure analysis tools]]

*[[User:Wayne Decatur/Molecular modeling tools]]

*[[User:Wayne Decatur/BioWikis]]

*[[User:Wayne Decatur/Code for Molecular Structure and Visualization Work]]

*[[User:Wayne Decatur/I-Ppo Morph Methods]]

*[[User:Wayne Decatur/3kg2 Morph Methods]]

*[[User:Wayne Decatur/3fpn Morph methods]]

*[[User:Wayne Decatur/3ewsSLASH3g0h Morph methods]]

*[[User:Wayne Decatur/humanaGal3hg2toothers morph methods]]

*[[User:Wayne Decatur/1cts to 2cts (citrate synthase) morph methods]]

*[[User:Wayne Decatur/1ig8 to 3b8a (hexokinase) morph methods]]

*[[User:Wayne Decatur/Converting Exported Proteopedia Pages from Jmol to JSmol]]

===Templates===

*[[User:Wayne Decatur/Templates|My Templates]]

===Help===

*[[:Proteopedia:Problems]]

*[http://chemapps.stolaf.edu/jmol/docs/ Jmol Command Reference Manual] for advanced scene authoring.

*[http://wiki.jmol.org/index.php?title=Main_Page Jmol Wiki]

===Useful Resources===

*[http://polyview.cchmc.org/polyview3d.html Polyview-3D]

*[http://jena3d.fli-leibniz.de/ Jena3D Viewer]

===Wikitext help===

*[http://en.wikipedia.org/wiki/Help:URL#URLs_in_external_links URLS in external links has the codes for using characters that aren't A-Z a-z 0-9 ._\/~%-+&#?!=()@ in links]

*[http://howto.wikia.com/wiki/Guide_to_Wikitext_Markup_Language_(wiki_code) Guide to Wikitext Markup Language (wiki code)]

*[http://en.wikipedia.org/wiki/How_to_edit How to edit] illustrates use of nowiki and pre tags.

*[http://howto.wikia.com/wiki/Howto_use_wikitext_(quick_cheat_sheet) Wikitext quick cheat sheet] also has how to make link to categories, too

*[http://meta.wikimedia.org/wiki/Help:Category Categories can be linked to with colon in front]

*[http://meta.wikimedia.org/wiki/Help:HTML_in_wikitext HTML in wikitext]

*[http://en.wikipedia.org/wiki/Template:Annotated_image/doc/Samples Allows cropping of images, in addition to annotating].

*[http://en.wikipedia.org/wiki/Table_markup WikiTable Markup Guide]

*[http://en.wikibooks.org/wiki/Editing_Wikitext/Tables Editing Wikitext/Tables]

*[http://en.wikipedia.org/wiki/Wikipedia:Images_linking_to_articles Images: linking to articles using wikitext]

User:Wayne Decatur: Difference between revisions

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@@ Line 1: / Line 1: @@
-Research Associate in the Department of Biochemistry and Molecular Biology at the University of Massachusetts at Amherst.
+[[Image:Me cropped smaller at Eileen Jewel performance 11-9-08..jpg|right|300px|Wayne Decatur in front row of Eilen Jewel private performance November 9th, 2008 at Williamsburg, MA Grange Hall]]<br />
+==Wayne Decatur==
+<!--
+Protopedia recognizes <br> and <p></p>  but most times <p></p>  not necessary.
+-->
+Research Associate in the Department of Biochemistry and Molecular Biology at the SUNY Upstate Medical University.<br>
+'''Member of the [[Proteopedia:About#The Proteopedia Team|Proteopedia Editorial Board]]'''.
-Interests:
+Project Jupyter Distinguished Contributor
-small RNAs; catalytic RNAs; the Ribosome
+Member of the Bioinformatics Virtual Coordination Network Instructor Consortium
+<p>
+Interests:<br>
+small RNAs and their associated ribonucleoprotein complexes; the Ribosome; RNA modification; catalytic RNAs; homing endonucleases, group I introns; leucine-rich repeats; hormones and their receptors.
+</p>
+<!--[http://people.umass.edu/wdecatur/index.html Wayne's site on the web] NO LONGER WORKS-->
+<!--[http://www.unh.edu/biochemistry/sower/post-doc-wayne-decatur.html Wayne's page on the Sower Lab site]-->
+[http://fomightez.github.io/ Wayne at Github]
+[https://pubmed.ncbi.nlm.nih.gov/?term=decatur-w Wayne's publications listed at the the U.S. National Library of Medicine's PubMed database]
+Past affiliations:<br>
+*Cornell University
+*University of Massachusetts at Amherst
+*University of New Hampshire
+email: {{Template:Decatur_email}}
+==Some Proteopedia Pages to Which I've Contributed==
+===Molecules: Topic Pages===
+*[[Ribosome|The Ribosome]]
+*[[Large Ribosomal Subunit of Haloarcula|Large Ribosomal Subunit of Haloarcula marismortui]]
+*[[User:Wayne Decatur/Interactions between Antibiotics and the Ribosome|Interactions between Antibiotics and the Ribosome]]
+*[[User:Wayne_Decatur/Haloarcula Large Ribosomal Subunit With Azithromycin|Azithromycin bound to the Large Ribosomal Subunit of Haloarcula marismortui]]
+*[[Suppression of RNA Silencing by Viruses]]
+*[[Plant Viral Protein p19 Suppression of RNA Silencing]]
+*[[Tomato aspermy virus protein 2b Suppression of RNA Silencing]]
+*[[Flock house virus B2 protein Suppression of RNA Silencing]]
+*[[Green Fluorescent Protein]]
+*[[Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa|DEAD-box helicase protein Vasa]]
+<!--*[[3dmq|Swi2/Snf2 protein RapA]] I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! --->
+<!--*[[2eyq|Mfd (TRCF, transcription-repair coupling factor)]] I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! --->
+<!--*[[3fpn|UvrA-UvrB interaction domains complex]] I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! --->
+<!--*[[3ews|DExD/H-box RNA-dependent ATPase DDX19 in the open]] and [[3g0h|closed]] cleft conformation  I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! --->
+<!--*[[3gfp|C-terminal domain of the DExD/H-box RNA-dependent ATPase Dbp5]]| I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! --->
+*[[RecG Bound to Three-Way DNA Junction|RecG in complex with a synthetic three-way DNA junction resembling a stalled replication fork]]
+*[[LepA|Escherichia coli LepA, the ribosomal back translocase]]
+*[[Pore forming toxin, α-hemolysin|The Pore Forming Toxin, &#945;-hemolysin]]
+<!--*[[3lqq|CED-4 Apoptosome]] SEEMS EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! I DID FInd the FILE FOR THE MORPH FOR THIS PAGE LISTED IN MY USER CONTRIBUTIONS-->
+*[[Glutamate receptor (GluA2)|The Glutamate Receptor (GluA2)]]
+*[[Luciferase]]
+*[[Citrate Synthase]]
+*[[Lamprey Variable Lymphocyte Receptor]]
+*[[Leucine-rich repeat|Leucine-Rich Repeat Proteins]]
+*[[Toll-like Receptors]]
+*[[Hormone]]
+*[[Human Follicle-Stimulating Hormone Complexed with its Receptor]]
+*[[G protein-coupled receptor]]
+*[[Forkhead box protein M1]]
+<!--*[[2beg|amyloid-beta fibrils]] I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! WOULD NEED TO MOVE TO BETTER NAMED PAGE --->
+*[[Kink-turn motif]]
+*[[Pseudouridine]]
+*[[Zika virus subgenomic flaviviral RNA]]
+*[[RNase P]]
+*[[yeast RNase P]]
+*[[Cubic Diamond Lattice Metal-Organic Framework]]
+*[[Catalytic Molybdenum Metal-Organic Framework]]
+===Topic Pages - Structural Bioinformatics===
+*[[About Macromolecular Structure]]
+*[[Alternate locations]]
+*[[altloc]]
+*[[Cation-pi interactions]]
+*[[Complexes]]
+*[[Cystine]]
+*[[Getting Unremediated PDB Files]]
+*[[Net charge]]
+*[[Pseudoenzyme]]
+*[[Interface analysis servers]]
+*[[Isoelectric point]]
+*[[Standard Residues]] and [[Non-Standard Residues]]
+*[[Reentrant loops]]
+*[[Web servers for convenient generation of publication-quality figures for molecular views]]
+===Topic Pages - Education===
+* [[Teaching Strategies Using Proteopedia]]
+* [[Teaching Scenes, Tutorials, and Educators' Pages]]
+* [[Proteopedia:Practical Guide to Advanced Proteopedia Authoring and Its Use in Teaching]]
+** ''Link above is the online version of Part C of a book chapter entitled '''Publishing in Proteopedia: The Guide''' by [[User:Jaime Prilusky|Jaime Prilusky]], [[User:Wayne Decatur|Wayne Decatur]], and [[User:Eric Martz|Eric Martz]]."
+**'''Full Reference''': ''Jaime Prilusky, Wayne Decatur, Eric Martz. Publishing in Proteopedia: The Guide, Advancing Methods for Biomolecular Crystallography. ''In'' NATO Science for Peace and Security Series A: Chemistry and Biology 2013, pp 277-295 [[http://dx.doi.org/10.1007/978-94-007-6232-9_24 doi:10.1007/978-94-007-6232-9_24]]''
+* [[High school teachers' resources]]
+===Meta Pages===
+* [[Help:Editing]]
+* [[Proteopedia:How to Make a Page]]
+* [[Proteopedia:About]]
+* [[Proteopedia:Policy]]
+* [[Proteopedia:Facebook]]
+* [[Proteopedia:Twitter]]
+* [[Proteopedia:Macros]]
+* [[Proteopedia:DIY:Macros]]
+* [[Proteopedia:Cookbook]]
+* [[Combine Proteopedia scenes with inline JSmol scripting]]
+* [[Proteopedia:DIY:Templates]]
+* [[Jmol]]
+* [[DRuMS]]
+* [[Wanted pages]]
+* [[Pages needing expansion‎]]
+* [[Pages needing improvement‎]]
+==Workshops, Lectures, and Seminars==
+*[[User:Wayne Decatur/ GS647-021 Structuring against Coronavirus 2020| UPSTATE MEDICAL GS647-021 Nanocourse: Structuring against Coronavirus (April-May) 2020]]
+*[[User:Wayne Decatur/UNH BCHEM833 Structural Analysis Workshop Session Fall 2012|UNH BIOCHEM833 Structural Analysis for Non-Structural Biologists Workshop Session Fall Semester (November 8th) 2012]]
+*[[User:Wayne Decatur/UNH BCHEM833 Structural Proteomics Introductory Lecture Fall 2012|UNH BIOCHEM833 Structural Analysis for Non-Structural Biologists Introductory Lecture Fall Semester (October 25th) 2012]]
+*[[User:Wayne Decatur/NASCE2011|Workshop for the NASCE Meeting at the University of Michigan, Ann Arbor, MI July 13 2011]]
+*[[User:Wayne Decatur/UNH CME Workshop March 11 2011|Workshop for CME at the University of New Hampshire, Durham, NH March 11 2011]]
+*[[User:Wayne Decatur/UNH Seminar Feb 1st 2011|Seminar at the University of New Hampshire, Durham, NH Feb 1st 2011]]
+*[[User:Wayne Decatur/Biochem642 Molecular Visualization 2010 Fall Sessions|Biochem642 Molecular Visualization 2010 Fall Sessions]]
+*[[User:Wayne Decatur/Biochem642 Molecular Visualization Sessions|Biochem642 Molecular Visualization 2009 Fall Sessions]]
+*[[User:Wayne Decatur/Chem791A Work Session|Proteopedia Work Session for Chem 791A-Biomolecular Structure]]
+==Personal Quicklinks==
+===All Protected Pages===
+*[http://proteopedia.org/wiki/index.php?title=Special:Contributions&limit=500&contribs=user&target=Wayne+Decatur&namespace=2 Search for User:Wayne Decatur in User Namespace]
+===Files Uploaded===
+*[http://proteopedia.org/wiki/index.php?limit=100&title=Special%3AContributions&contribs=user&target=Wayne+Decatur&namespace=6&year=&month=-1 Files Uploaded by Wayne Decatur]
+===Sandboxes===
+*[[Sandbox1rpu]] working out configuration&isosurfaces&dots problems
+*[[Sandbox2hvy]] test for dots in another file
+* [[Sandbox CsrA]]
+* [[Sandbox TestMultiSurface]]
+===Protected Sandbox Pages===
+*[[User:Wayne Decatur/Protected Sandbox Pages|My Protected Sandbox Pages]]
+===Protected Topic Pages===
+*[[User:Wayne_Decatur/Haloarcula Large Ribosomal Subunit]]
+*[[User:Wayne_Decatur/Haloarcula Large Ribosomal Subunit With Azithromycin]]
+*[[User:Wayne Decatur/Interactions between Antibiotics and the Ribosome]]
+*[[User:Wayne Decatur/Suppression of RNA Silencing by Viruses]]
+*[[User:Wayne Decatur/Plant Viral Protein p19 Suppression of RNA Silencing]]
+*[[User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing]]
+*[[User:Wayne Decatur/Flock house virus B2 protein Suppression of RNA Silencing]]
+*[[User:Wayne Decatur/kink-turn motif]]
+*[[User:Wayne Decatur/Teaching Proteopedia]]
+*[[User:Wayne Decatur/Editing Getting Unremediated PDB Files]]
+*[[User:Wayne Decatur/Moving Components or Parts of Structures]]
+*[[User:Wayne Decatur/Generate Unfolded Structures]]
+*[[User:Wayne Decatur/Alter Disulfide Bonds in a Structure ]]
+*[[User:Wayne Decatur/4ay9 pymol]]
+*[[User:Wayne Decatur/Hsp90 Structures with client proteins]]
+*[[User:Wayne Decatur/Gal 4]]
+*[[User:Wayne Decatur/mof_dev]]
+*[[User:Wayne Decatur/Homology Modeling]]
+*[[User:Wayne Decatur/Sequence analysis tools]]
+*[[User:Wayne Decatur/Structure analysis tools]]
+*[[User:Wayne Decatur/Molecular modeling tools]]
+*[[User:Wayne Decatur/BioWikis]]
+*[[User:Wayne Decatur/Code for Molecular Structure and Visualization Work]]
+*[[User:Wayne Decatur/I-Ppo Morph Methods]]
+*[[User:Wayne Decatur/3kg2 Morph Methods]]
+*[[User:Wayne Decatur/3fpn Morph methods]]
+*[[User:Wayne Decatur/3ewsSLASH3g0h Morph methods]]
+*[[User:Wayne Decatur/humanaGal3hg2toothers morph methods]]
+*[[User:Wayne Decatur/1cts to 2cts (citrate synthase) morph methods]]
+*[[User:Wayne Decatur/1ig8 to 3b8a (hexokinase) morph methods]]
+*[[User:Wayne Decatur/Converting Exported Proteopedia Pages from Jmol to JSmol]]
+===Templates===
+*[[User:Wayne Decatur/Templates|My Templates]]
+===Help===
+*[[:Proteopedia:Problems]]
+*[http://chemapps.stolaf.edu/jmol/docs/ Jmol Command Reference Manual] for advanced scene authoring.
+*[http://wiki.jmol.org/index.php?title=Main_Page Jmol Wiki]
+===Useful Resources===
+*[http://polyview.cchmc.org/polyview3d.html Polyview-3D]
+*[http://jena3d.fli-leibniz.de/ Jena3D Viewer]
+===Wikitext help===
+*[http://en.wikipedia.org/wiki/Help:URL#URLs_in_external_links URLS in external links has the codes for using characters that aren't A-Z a-z 0-9 ._\/~%-+&#?!=()@ in links]
+<!--I needed that for my linking to my publications at PubMed in order to generate brackers for [au]-->
+*[http://howto.wikia.com/wiki/Guide_to_Wikitext_Markup_Language_(wiki_code) Guide to Wikitext Markup Language (wiki code)]
+*[http://en.wikipedia.org/wiki/How_to_edit How to edit] illustrates use of nowiki and pre tags.
+*[http://howto.wikia.com/wiki/Howto_use_wikitext_(quick_cheat_sheet) Wikitext quick cheat sheet] also has how to make link to categories, too
+*[http://meta.wikimedia.org/wiki/Help:Category Categories can be linked to with colon in front]
+*[http://meta.wikimedia.org/wiki/Help:HTML_in_wikitext HTML in wikitext]<!--apparently I should be using <span> tags and not <font> as <font> is deprecated now-->
+*[http://en.wikipedia.org/wiki/Template:Annotated_image/doc/Samples Allows cropping of images, in addition to annotating].
+*[http://en.wikipedia.org/wiki/Table_markup WikiTable Markup Guide]
+*[http://en.wikibooks.org/wiki/Editing_Wikitext/Tables Editing Wikitext/Tables]
+*[http://en.wikipedia.org/wiki/Wikipedia:Images_linking_to_articles Images: linking to articles using wikitext]