User:Wayne Decatur/Sandbox: Difference between revisions
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<scene name='User:Wayne_Decatur/Sandbox/Test/3'>TextToBeDisplayed</scene> | <scene name='User:Wayne_Decatur/Sandbox/Test/3'>TextToBeDisplayed</scene> | ||
[[Help:Protected_Pages|'''here''']] link with 3 quotes<br> | |||
[[Help:Protected_Pages|''here'']] link with 2 quotes<br> | |||
[[Help:Protected_Pages|here]] link with no quotes<br> | |||
==HOW TO MAKE AN ANIMATION USING PROTEOPEDIA SCREEN AUTHORING TOOLS AND THE CONSOLE== | |||
<applet load='2hty2hu4_j.pdb' size='500' frame='true' align='right' caption='Morph of N1 alone (2hty) to N1 complexed with Tamiflu (2hu4). The position where Tamiflu will bind is shown translucent except when bound in the empirically-determined model.' scene='Avian_Influenza_Neuraminidase,_Tamiflu_and_Relenza/Morph_2hty_to_2hu4/2' /> | |||
T | |||
s, <scene name='Avian_Influenza_Neuraminidase,_Tamiflu_and_Relenza/Morph_2hty_to_2hu4/7'>Asp151, Glu119</scene>, closer to the inhibitor. | |||
Here is the<br> | |||
<scene name='User:Wayne_Decatur/Sandbox/Test_animation/1'>test animation WAYNE made here on this page</scene> | |||
<!--HOW TO MAKE AN ANIMATION USING PROTEOPEDIA SCREEN AUTHORING TOOLS AND THE CONSOLE | |||
model 0;select all; spacefill on; | |||
that set up default display and then I loaded 2hty2hu4_j.pdb using load molecule under Scene authoring tools | |||
then in console, entered 'select 1.8' to select 8th model in file and then described how to display that particular model of the file that has 8 models: | |||
select 1.8; spacefill 0.2;wireframe 0.1; color red; | |||
anim mode palindrome; | |||
anim on; | |||
anim fps 8; # frames per second --> | |||
<scene name='User:Wayne_Decatur/Sandbox/Test_animation/3'>all in scene authoring tools with checked box</scene> | |||
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WEIRD thing with configuration I saw on October 24th 2009. When I enter 'configuration 1;' or 'configuration 2;' console in Proteopedia SAT, then it added weird lines from bases and among protein that were faint but I couldn't get rid of. It wouldn't happen in the newest version of FirstGlance linked to 1rpu page but then later it even wouldn't happen in SAT when I initiated new browser windows and JAVA runs. At first I thought it was leaving off the semi-colon but then it seemed to work with the semi-colon everywhere too. So another weird thing like when you need to scroll side of browser window to get a stuck animation going. | |||
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==HOW TO on REFS== | |||
This is a sample <ref>Richardson DC, Richardson JS. The kinemage: a tool for scientific communication. | |||
Protein Sci. 1992 1:3-9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/1304880 1304880]</ref> of the | |||
standard references and one <ref>PMID:18673581</ref> with the PubmedID only new option <nowiki>"<ref>PMID:18673581</ref>"</nowiki>. | |||
It's possible now to have additional references by adding them to the group '''xtra'''. | |||
See this page source under ''Additional Literature and Resources''. | |||
== References == | |||
<references/> | |||
== Additional Literature and Resources == | |||
<ref group="xtra">PMID:15068885</ref><ref group="xtra">PMID:14749769</ref><ref group="xtra">PMID:1304880</ref><ref group="xtra">PMID:16270100</ref><ref group="xtra">PMID:14661029</ref> <!--Putting all on one line eliminates blank space at top--> | |||
<references group="xtra"/> | |||
