2k9r: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
New page: '''Unreleased structure''' The entry 2k9r is ON HOLD Authors: Hua, Q.X., Xu, B., Huang, K., Hu, S.Q., Nakarawa, S., Philips, W.H.Jia., Wang, S.H., Wittaker, L., Wittaker, J., Katsoyanni...
 
OCA (talk | contribs)
No edit summary
 
(17 intermediate revisions by the same user not shown)
Line 1: Line 1:
'''Unreleased structure'''


The entry 2k9r is ON HOLD
==Enhancing the activity of insulin by stereospecific unfolding==
<StructureSection load='2k9r' size='340' side='right'caption='[[2k9r]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2k9r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K9R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K9R FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DAL:D-ALANINE'>DAL</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k9r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k9r OCA], [https://pdbe.org/2k9r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k9r RCSB], [https://www.ebi.ac.uk/pdbsum/2k9r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k9r ProSAT]</span></td></tr>
</table>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k9/2k9r_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k9r ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
A central tenet of molecular biology holds that the function of a protein is mediated by its structure. An inactive ground-state conformation may nonetheless be enjoined by the interplay of competing biological constraints. A model is provided by insulin, well characterized at atomic resolution by x-ray crystallography. Here, we demonstrate that the activity of the hormone is enhanced by stereospecific unfolding of a conserved structural element. A bifunctional beta-strand mediates both self-assembly (within beta-cell storage vesicles) and receptor binding (in the bloodstream). This strand is anchored by an invariant side chain (Phe(B24)); its substitution by Ala leads to an unstable but native-like analog of low activity. Substitution by d-Ala is equally destabilizing, and yet the protein diastereomer exhibits enhanced activity with segmental unfolding of the beta-strand. Corresponding photoactivable derivatives (containing l- or d-para-azido-Phe) cross-link to the insulin receptor with higher d-specific efficiency. Aberrant exposure of hydrophobic surfaces in the analogs is associated with accelerated fibrillation, a form of aggregation-coupled misfolding associated with cellular toxicity. Conservation of Phe(B24), enforced by its dual role in native self-assembly and induced fit, thus highlights the implicit role of misfolding as an evolutionary constraint. Whereas classical crystal structures of insulin depict its storage form, signaling requires engagement of a detachable arm at an extended receptor interface. Because this active conformation resembles an amyloidogenic intermediate, we envisage that induced fit and self-assembly represent complementary molecular adaptations to potential proteotoxicity. The cryptic threat of misfolding poses a universal constraint in the evolution of polypeptide sequences.


Authors: Hua, Q.X., Xu, B., Huang, K., Hu, S.Q., Nakarawa, S., Philips, W.H.Jia., Wang, S.H., Wittaker, L., Wittaker, J., Katsoyannis, P.G., Weiss, M.A.
Enhancing the activity of a protein by stereospecific unfolding: conformational life cycle of insulin and its evolutionary origins.,Hua QX, Xu B, Huang K, Hu SQ, Nakagawa S, Jia W, Wang S, Whittaker J, Katsoyannis PG, Weiss MA J Biol Chem. 2009 May 22;284(21):14586-96. Epub 2009 Mar 25. PMID:19321436<ref>PMID:19321436</ref>


Description: DECIPHERING THE ACTIVE STRUCTURE OF INSULIN BY CHIRAL MUTAGE EVIDENCE FOR A CONFORMATIONAL SWITCH AT B24
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
</div>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 29 10:18:01 2008''
<div class="pdbe-citations 2k9r" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Hu SQ]]
[[Category: Hua QX]]
[[Category: Huang K]]
[[Category: Jia WH]]
[[Category: Katsoyannis PG]]
[[Category: Nakarawa S]]
[[Category: Philips NFP]]
[[Category: Weiss MA]]
[[Category: Wittaker J]]
[[Category: Wittaker L]]
[[Category: Xu B]]

Latest revision as of 06:09, 27 November 2024

Enhancing the activity of insulin by stereospecific unfolding

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA