3bmb: Difference between revisions

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{{Seed}}
[[Image:3bmb.jpg|left|200px]]


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==Crystal structure of a new RNA polymerase interacting protein==
The line below this paragraph, containing "STRUCTURE_3bmb", creates the "Structure Box" on the page.
<StructureSection load='3bmb' size='340' side='right'caption='[[3bmb]], [[Resolution|resolution]] 1.91&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3bmb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BMB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BMB FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.91&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3bmb|  PDB=3bmb  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bmb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bmb OCA], [https://pdbe.org/3bmb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bmb RCSB], [https://www.ebi.ac.uk/pdbsum/3bmb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bmb ProSAT]</span></td></tr>
 
</table>
===Crystal structure of a new RNA polymerase interacting protein===
== Function ==
 
[https://www.uniprot.org/uniprot/RNK_ECOLI RNK_ECOLI] May act as an anti-Gre factor. Regulates the level of the nucleoside diphosphate kinase Ndk.<ref>PMID:8596442</ref> <ref>PMID:18760284</ref>
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_18760284}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 18760284 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bm/3bmb_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_18760284}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
3BMB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BMB OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bmb ConSurf].
 
<div style="clear:both"></div>
==Reference==
== References ==
Crystal Structure of Escherichia coli Rnk, a New RNA Polymerase-Interacting Protein., Lamour V, Rutherford ST, Kuznedelov K, Ramagopal UA, Gourse RL, Severinov K, Darst SA, J Mol Biol. 2008 Aug 12. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18760284 18760284]
<references/>
__TOC__
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Darst, S A.]]
[[Category: Darst SA]]
[[Category: Lamour, V.]]
[[Category: Lamour V]]
[[Category: Anti-gre factor]]
[[Category: Elongation factor]]
[[Category: Rna binding protein]]
[[Category: Rna polymerase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 29 10:53:58 2008''

Latest revision as of 09:29, 21 February 2024

Crystal structure of a new RNA polymerase interacting protein

3bmb, resolution 1.91Å

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