2jkb: Difference between revisions

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{{Seed}}
[[Image:2jkb.png|left|200px]]


<!--
==Crystal structure of Streptococcus pneumoniae NanB in complex with 2, 7-anhydro-Neu5Ac==
The line below this paragraph, containing "STRUCTURE_2jkb", creates the "Structure Box" on the page.
<StructureSection load='2jkb' size='340' side='right'caption='[[2jkb]], [[Resolution|resolution]] 1.54&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2jkb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_TIGR4 Streptococcus pneumoniae TIGR4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JKB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JKB FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.54&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SKD:2-ACETYLAMINO-7-(1,2-DIHYDROXY-ETHYL)-3-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCTANE-5-CARBOXYLIC+ACID'>SKD</scene></td></tr>
{{STRUCTURE_2jkb| PDB=2jkb |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jkb OCA], [https://pdbe.org/2jkb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jkb RCSB], [https://www.ebi.ac.uk/pdbsum/2jkb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jkb ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/NANB_STRPN NANB_STRPN]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jk/2jkb_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jkb ConSurf].
<div style="clear:both"></div>


===CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIAE NANB IN COMPLEX WITH 2,7-ANHYDRO-NEU5AC===
==See Also==
 
*[[Neuraminidase 3D structures|Neuraminidase 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_18775704}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 18775704 is the PubMed ID number.
[[Category: Streptococcus pneumoniae TIGR4]]
-->
[[Category: Gut H]]
{{ABSTRACT_PUBMED_18775704}}
[[Category: King SJ]]
 
[[Category: Walsh MA]]
==About this Structure==
2JKB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JKB OCA].
 
==Reference==
Structural and functional studies of Streptococcus pneumoniae neuraminidase B: An intramolecular trans-sialidase., Gut H, King SJ, Walsh MA, FEBS Lett. 2008 Oct 15;582(23-24):3348-52. Epub 2008 Sep 5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18775704 18775704]
[[Category: Anhydrosialidase]]
[[Category: Single protein]]
[[Category: Streptococcus pneumoniae]]
[[Category: Gut, H.]]
[[Category: King, S J.]]
[[Category: Walsh, M A.]]
[[Category: Glycosidase]]
[[Category: Intramolecular trans-sialidase]]
[[Category: Lyase]]
[[Category: Neuraminidase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 12 20:43:17 2008''

Latest revision as of 06:42, 1 May 2024

Crystal structure of Streptococcus pneumoniae NanB in complex with 2, 7-anhydro-Neu5Ac

2jkb, resolution 1.54Å

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