1ybx: Difference between revisions

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{{Seed}}
[[Image:1ybx.png|left|200px]]


<!--
==Conserved hypothetical protein Cth-383 from Clostridium thermocellum==
The line below this paragraph, containing "STRUCTURE_1ybx", creates the "Structure Box" on the page.
<StructureSection load='1ybx' size='340' side='right'caption='[[1ybx]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1ybx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YBX FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_1ybx|  PDB=1ybx  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ybx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybx OCA], [https://pdbe.org/1ybx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ybx RCSB], [https://www.ebi.ac.uk/pdbsum/1ybx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ybx ProSAT], [https://www.topsan.org/Proteins/SECSG/1ybx TOPSAN]</span></td></tr>
 
</table>
===Conserved hypothetical protein Cth-383 from Clostridium thermocellum===
== Function ==
 
[https://www.uniprot.org/uniprot/Y2143_ACET2 Y2143_ACET2] Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.[HAMAP-Rule:MF_00274]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1YBX is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBX OCA].  
Check<jmol>
[[Category: Clostridium thermocellum]]
  <jmolCheckbox>
[[Category: Chang, J.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1ybx_consurf.spt"</scriptWhenChecked>
[[Category: Chang, S H.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Chen, L.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Florence, Q.]]
  </jmolCheckbox>
[[Category: Habel, J.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ybx ConSurf].
[[Category: Horanyi, P.]]
<div style="clear:both"></div>
[[Category: Kataeva, I.]]
__TOC__
[[Category: Lee, D.]]
</StructureSection>
[[Category: Lin, D.]]
[[Category: Acetivibrio thermocellus]]
[[Category: Liu, Z J.]]
[[Category: Large Structures]]
[[Category: Ljundahl, L.]]
[[Category: Chang J]]
[[Category: Nguyen, J.]]
[[Category: Chang S-H]]
[[Category: Rose, J.]]
[[Category: Chen L]]
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
[[Category: Florence Q]]
[[Category: Tempel, W.]]
[[Category: Habel J]]
[[Category: Wang, B C.]]
[[Category: Horanyi P]]
[[Category: Xu, H.]]
[[Category: Kataeva I]]
[[Category: Zhang, H.]]
[[Category: Lee D]]
[[Category: Zhao, M.]]
[[Category: Lin D]]
[[Category: Zhou, W.]]
[[Category: Liu Z-J]]
[[Category: Clostridium thermocellum]]
[[Category: Ljundahl L]]
[[Category: Conserved hypothetical protein]]
[[Category: Nguyen J]]
[[Category: Protein structure initiative]]
[[Category: Rose J]]
[[Category: Psi]]
[[Category: Tempel W]]
[[Category: Secsg]]
[[Category: Wang B-C]]
[[Category: Southeast collaboratory for structural genomic]]
[[Category: Xu H]]
[[Category: Structural genomic]]
[[Category: Zhang H]]
 
[[Category: Zhao M]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 10:29:54 2008''
[[Category: Zhou W]]
Retrieved from "https://proteopedia.org/1ybx"