3d3q: Difference between revisions

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{{Seed}}
[[Image:3d3q.png|left|200px]]


<!--
==Crystal structure of tRNA delta(2)-isopentenylpyrophosphate transferase (SE0981) from Staphylococcus epidermidis. Northeast Structural Genomics Consortium target SeR100==
The line below this paragraph, containing "STRUCTURE_3d3q", creates the "Structure Box" on the page.
<StructureSection load='3d3q' size='340' side='right'caption='[[3d3q]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3d3q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_epidermidis_ATCC_12228 Staphylococcus epidermidis ATCC 12228]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D3Q FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3d3q|  PDB=3d3q  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d3q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3q OCA], [https://pdbe.org/3d3q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d3q RCSB], [https://www.ebi.ac.uk/pdbsum/3d3q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d3q ProSAT], [https://www.topsan.org/Proteins/NESGC/3d3q TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of tRNA delta(2)-isopentenylpyrophosphate transferase (SE0981) from Staphylococcus epidermidis. Northeast Structural Genomics Consortium target SeR100===
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
3D3Q is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Staphylococcus_epidermidis_atcc_12228 Staphylococcus epidermidis atcc 12228]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3Q OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d3/3d3q_consurf.spt"</scriptWhenChecked>
[[Category: Staphylococcus epidermidis atcc 12228]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: TRNA isopentenyltransferase]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Abashidze, M.]]
  </jmolCheckbox>
[[Category: Acton, T B.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d3q ConSurf].
[[Category: Everett, J K.]]
<div style="clear:both"></div>
[[Category: Forouhar, F.]]
__TOC__
[[Category: Hunt, J F.]]
</StructureSection>
[[Category: Lee, D.]]
[[Category: Large Structures]]
[[Category: Maglaqui, M.]]
[[Category: Staphylococcus epidermidis ATCC 12228]]
[[Category: Mao, L.]]
[[Category: Abashidze M]]
[[Category: Montelione, G T.]]
[[Category: Acton TB]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Everett JK]]
[[Category: Seetharaman, J.]]
[[Category: Forouhar F]]
[[Category: Tong, L.]]
[[Category: Hunt JF]]
[[Category: Xiao, R.]]
[[Category: Lee D]]
[[Category: Alpha-beta protein]]
[[Category: Maglaqui M]]
[[Category: Atp-binding]]
[[Category: Mao L]]
[[Category: Nesg]]
[[Category: Montelione GT]]
[[Category: Northeast structural genomics consortium]]
[[Category: Seetharaman J]]
[[Category: Nucleotide-binding]]
[[Category: Tong L]]
[[Category: Nucleotidyltransferase]]
[[Category: Xiao R]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
[[Category: Transferase]]
[[Category: Trna processing]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 10:41:49 2008''

Latest revision as of 01:42, 21 November 2024

Crystal structure of tRNA delta(2)-isopentenylpyrophosphate transferase (SE0981) from Staphylococcus epidermidis. Northeast Structural Genomics Consortium target SeR100

3d3q, resolution 2.70Å

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