3dde: Difference between revisions

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{{Seed}}
[[Image:3dde.png|left|200px]]


<!--
==Crystal structure of a domain of unknown function with a heme oxygenase-like fold (sden_3740) from shewanella denitrificans os217 at 2.30 A resolution==
The line below this paragraph, containing "STRUCTURE_3dde", creates the "Structure Box" on the page.
<StructureSection load='3dde' size='340' side='right'caption='[[3dde]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dde]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_denitrificans_OS217 Shewanella denitrificans OS217]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DDE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DDE FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
{{STRUCTURE_3dde|  PDB=3dde  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dde OCA], [https://pdbe.org/3dde PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dde RCSB], [https://www.ebi.ac.uk/pdbsum/3dde PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dde ProSAT], [https://www.topsan.org/Proteins/JCSG/3dde TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of Domain of Unknown Function with a Heme Oxygenase-like Fold (YP_564736.1) from SHEWANELLA DENITRIFICANS OS-217 at 2.30 A resolution===
== Function ==
 
[https://www.uniprot.org/uniprot/Q12HR3_SHEDO Q12HR3_SHEDO]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3DDE is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Shewanella_denitrificans_os217 Shewanella denitrificans os217]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DDE OCA].  
Check<jmol>
[[Category: Shewanella denitrificans os217]]
  <jmolCheckbox>
[[Category: JCSG, Joint Center for Structural Genomics.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dd/3dde_consurf.spt"</scriptWhenChecked>
[[Category: Domain of unknown function with a heme oxygenase-like fold]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Jcsg]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Joint center for structural genomic]]
  </jmolCheckbox>
[[Category: Protein structure initiative]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dde ConSurf].
[[Category: Psi-2]]
<div style="clear:both"></div>
[[Category: Structural genomic]]
__TOC__
[[Category: Unknown function]]
</StructureSection>
[[Category: Yp_564736 1]]
[[Category: Large Structures]]
 
[[Category: Shewanella denitrificans OS217]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 10:47:23 2008''

Latest revision as of 07:55, 9 October 2024

Crystal structure of a domain of unknown function with a heme oxygenase-like fold (sden_3740) from shewanella denitrificans os217 at 2.30 A resolution

3dde, resolution 2.30Å

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