3e8v: Difference between revisions

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{{Seed}}
[[Image:3e8v.png|left|200px]]


<!--
==Crystal structure of a possible transglutaminase-family protein proteolytic fragment from Bacteroides fragilis==
The line below this paragraph, containing "STRUCTURE_3e8v", creates the "Structure Box" on the page.
<StructureSection load='3e8v' size='340' side='right'caption='[[3e8v]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3e8v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_fragilis_NCTC_9343 Bacteroides fragilis NCTC 9343]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E8V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E8V FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
{{STRUCTURE_3e8v|  PDB=3e8v  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e8v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e8v OCA], [https://pdbe.org/3e8v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e8v RCSB], [https://www.ebi.ac.uk/pdbsum/3e8v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e8v ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3e8v TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of a possible transglutaminase-family protein proteolytic fragment from Bacteroides fragilis===
== Function ==
 
[https://www.uniprot.org/uniprot/Q5LGG0_BACFN Q5LGG0_BACFN]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3E8V is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacteroides_fragilis_nctc_9343 Bacteroides fragilis nctc 9343]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E8V OCA].  
Check<jmol>
[[Category: Bacteroides fragilis nctc 9343]]
  <jmolCheckbox>
[[Category: Almo, S C.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e8/3e8v_consurf.spt"</scriptWhenChecked>
[[Category: Bain, K T.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Bonanno, J B.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Burley, S K.]]
  </jmolCheckbox>
[[Category: Hu, S.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e8v ConSurf].
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
<div style="clear:both"></div>
[[Category: Romero, R.]]
__TOC__
[[Category: Rutter, M.]]
</StructureSection>
[[Category: Sauder, J M.]]
[[Category: Bacteroides fragilis NCTC 9343]]
[[Category: Smith, D.]]
[[Category: Large Structures]]
[[Category: Wasserman, S.]]
[[Category: Almo SC]]
[[Category: New york sgx research center for structural genomic]]
[[Category: Bain KT]]
[[Category: Nysgxrc]]
[[Category: Bonanno JB]]
[[Category: Protein structure initiative]]
[[Category: Burley SK]]
[[Category: Psi-2]]
[[Category: Hu S]]
[[Category: Structural genomic]]
[[Category: Romero R]]
[[Category: Unknown function]]
[[Category: Rutter M]]
 
[[Category: Sauder JM]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 11:12:58 2008''
[[Category: Smith D]]
[[Category: Wasserman S]]

Latest revision as of 09:45, 21 February 2024

Crystal structure of a possible transglutaminase-family protein proteolytic fragment from Bacteroides fragilis

3e8v, resolution 2.40Å

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