2dct: Difference between revisions

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{{Seed}}
[[Image:2dct.png|left|200px]]


<!--
==Crystal structure of the TT1209 from Thermus thermophilus HB8==
The line below this paragraph, containing "STRUCTURE_2dct", creates the "Structure Box" on the page.
<StructureSection load='2dct' size='340' side='right'caption='[[2dct]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2dct]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DCT FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
{{STRUCTURE_2dct|  PDB=2dct  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dct FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dct OCA], [https://pdbe.org/2dct PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dct RCSB], [https://www.ebi.ac.uk/pdbsum/2dct PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dct ProSAT], [https://www.topsan.org/Proteins/RSGI/2dct TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of the TT1209 from Thermus thermophilus HB8===
== Function ==
 
[https://www.uniprot.org/uniprot/Q5SM39_THET8 Q5SM39_THET8]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2DCT is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCT OCA].  
Check<jmol>
[[Category: Thermus thermophilus]]
  <jmolCheckbox>
[[Category: Asada, Y.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/2dct_consurf.spt"</scriptWhenChecked>
[[Category: Kunishima, N.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Nakamoto, T.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Ono, N.]]
  </jmolCheckbox>
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dct ConSurf].
[[Category: Shimada, H.]]
<div style="clear:both"></div>
[[Category: Shimizu, K.]]
__TOC__
[[Category: Sugahara, M.]]
</StructureSection>
[[Category: Yamamoto, H.]]
[[Category: Large Structures]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Thermus thermophilus HB8]]
[[Category: Rsgi]]
[[Category: Asada Y]]
[[Category: Structural genomic]]
[[Category: Kunishima N]]
[[Category: Thermus thermophilus hb8]]
[[Category: Nakamoto T]]
 
[[Category: Ono N]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 11:54:40 2008''
[[Category: Shimada H]]
[[Category: Shimizu K]]
[[Category: Sugahara M]]
[[Category: Yamamoto H]]
Retrieved from "https://proteopedia.org/2dct"