1ugl: Difference between revisions

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{{Seed}}
[[Image:1ugl.png|left|200px]]


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==Solution structure of S8-SP11==
The line below this paragraph, containing "STRUCTURE_1ugl", creates the "Structure Box" on the page.
<StructureSection load='1ugl' size='340' side='right'caption='[[1ugl]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1ugl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Brassica_rapa Brassica rapa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UGL FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 30 models</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ugl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ugl OCA], [https://pdbe.org/1ugl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ugl RCSB], [https://www.ebi.ac.uk/pdbsum/1ugl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ugl ProSAT], [https://www.topsan.org/Proteins/RSGI/1ugl TOPSAN]</span></td></tr>
{{STRUCTURE_1ugl|  PDB=1ugl  |  SCENE=  }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q9SE17_BRACM Q9SE17_BRACM]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Many flowering plants possess a self-incompatibility system to prevent inbreeding. In Brassica rapa, self/non-self recognition in mating is established through S-haplotype-specific interactions between stigma receptors and S-locus protein 11 (SP11, also called S-locus cysteine-rich protein) that is encoded at the highly polymorphic S-locus. Here we describe the solution structure of the SP11 protein of the S8-haplotype (S8-SP11), which specifically binds to the stigma factor of the same haplotype. It folds into an alpha/beta sandwich structure that resembles those of plant defensins. Residues important for structural integrity are highly conserved among the allelic SP11s, suggesting the existence of a common folding pattern. Structure-based sequence alignment and homology modeling of allelic SP11 identified a hyper-variable (HV) region, which is thought to form a loop that bulges out from the body of the protein that is amenable to solvent exposure. We suggest that the HV region could serve as a specific binding site for the stigma receptor.


===Solution structure of S8-SP11===
Structure of the male determinant factor for Brassica self-incompatibility.,Mishima M, Takayama S, Sasaki K, Jee JG, Kojima C, Isogai A, Shirakawa M J Biol Chem. 2003 Sep 19;278(38):36389-95. Epub 2003 Jun 30. PMID:12835321<ref>PMID:12835321</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The line below this paragraph, {{ABSTRACT_PUBMED_12835321}}, adds the Publication Abstract to the page
<div class="pdbe-citations 1ugl" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 12835321 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_12835321}}
__TOC__
 
</StructureSection>
==About this Structure==
[[Category: Brassica rapa]]
1UGL is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGL OCA].
[[Category: Large Structures]]
 
[[Category: Isogai A]]
==Reference==
[[Category: Jee JG]]
Structure of the male determinant factor for Brassica self-incompatibility., Mishima M, Takayama S, Sasaki K, Jee JG, Kojima C, Isogai A, Shirakawa M, J Biol Chem. 2003 Sep 19;278(38):36389-95. Epub 2003 Jun 30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12835321 12835321]
[[Category: Kojima C]]
[[Category: Isogai, A.]]
[[Category: Mishima M]]
[[Category: Jee, J G.]]
[[Category: Sasaki K]]
[[Category: Kojima, C.]]
[[Category: Shirakawa M]]
[[Category: Mishima, M.]]
[[Category: Takayama S]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Sasaki, K.]]
[[Category: Shirakawa, M.]]
[[Category: Takayama, S.]]
[[Category: Cysteine-rich]]
[[Category: Defensin-like]]
[[Category: Male determinant of self-incompatibility]]
[[Category: Nmr]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Rsgi]]
[[Category: Scr]]
[[Category: Sp11]]
[[Category: Structural genomic]]
 
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