1ydf: Difference between revisions

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{{Seed}}
[[Image:1ydf.png|left|200px]]


<!--
==Crystal structure of a HAD-like phosphatase from Streptococcus pneumoniae==
The line below this paragraph, containing "STRUCTURE_1ydf", creates the "Structure Box" on the page.
<StructureSection load='1ydf' size='340' side='right'caption='[[1ydf]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1ydf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_TIGR4 Streptococcus pneumoniae TIGR4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YDF FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
{{STRUCTURE_1ydf|  PDB=1ydf  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ydf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ydf OCA], [https://pdbe.org/1ydf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ydf RCSB], [https://www.ebi.ac.uk/pdbsum/1ydf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ydf ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1ydf TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of a HAD-like phosphatase from Streptococcus pneumoniae===
== Function ==
 
[https://www.uniprot.org/uniprot/A0A0H2UQJ9_STRPN A0A0H2UQJ9_STRPN]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1YDF is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDF OCA].  
Check<jmol>
[[Category: Streptococcus pneumoniae tigr4]]
  <jmolCheckbox>
[[Category: Burley, S K.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yd/1ydf_consurf.spt"</scriptWhenChecked>
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Seetharaman, J.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Swaminathan, S.]]
  </jmolCheckbox>
[[Category: Hydrolase haloacid dehalogenase-like family]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ydf ConSurf].
[[Category: Hypothetical protein]]
<div style="clear:both"></div>
[[Category: New york structural genomix research consortium]]
__TOC__
[[Category: Nysgxrc]]
</StructureSection>
[[Category: Protein structure initiative]]
[[Category: Large Structures]]
[[Category: Psi]]
[[Category: Streptococcus pneumoniae TIGR4]]
[[Category: Structural genomic]]
[[Category: Burley SK]]
 
[[Category: Seetharaman J]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:56:27 2008''
[[Category: Swaminathan S]]
Retrieved from "https://proteopedia.org/1ydf"