3civ: Difference between revisions

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{{Seed}}
[[Image:3civ.png|left|200px]]


<!--
==Crystal structure of the endo-beta-1,4-mannanase from Alicyclobacillus acidocaldarius==
The line below this paragraph, containing "STRUCTURE_3civ", creates the "Structure Box" on the page.
<StructureSection load='3civ' size='340' side='right'caption='[[3civ]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3civ]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Alicyclobacillus_acidocaldarius Alicyclobacillus acidocaldarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CIV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CIV FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3civ FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3civ OCA], [https://pdbe.org/3civ PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3civ RCSB], [https://www.ebi.ac.uk/pdbsum/3civ PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3civ ProSAT]</span></td></tr>
{{STRUCTURE_3civ|  PDB=3civ  |  SCENE=  }}
</table>
 
== Function ==
===Crystal structure of the endo-beta-1,4-mannanase from Alicyclobacillus acidocaldarius===
[https://www.uniprot.org/uniprot/A5H1I6_9BACL A5H1I6_9BACL]
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
<!--
Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_18755688}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 18755688 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ci/3civ_consurf.spt"</scriptWhenChecked>
-->
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_18755688}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3civ ConSurf].
3CIV is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Alicyclobacillus_acidocaldarius Alicyclobacillus acidocaldarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CIV OCA].  
<div style="clear:both"></div>
 
__TOC__
==Reference==
</StructureSection>
Biochemical and Structural Characterization of the Intracellular Mannanase AaManA of Alicyclobacillus acidocaldarius Reveals a Novel Glycoside Hydrolase Family Belonging to Clan GH-A., Zhang Y, Ju J, Peng H, Gao F, Zhou C, Zeng Y, Xue Y, Li Y, Henrissat B, Gao GF, Ma Y, J Biol Chem. 2008 Nov 14;283(46):31551-8. Epub 2008 Aug 28. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18755688 18755688]
 
Crystallization and preliminary X-ray study of native and selenomethionyl beta-1,4-mannanase AaManA from Alicyclobacillus acidocaldariusTc-12-31., Zhang Y, Gao F, Xue Y, Zeng Y, Peng H, Qi J, Ma Y, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Mar 1;64(Pt, 3):209-12. Epub 2008 Feb 29. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18323611 18323611]
[[Category: Alicyclobacillus acidocaldarius]]
[[Category: Alicyclobacillus acidocaldarius]]
[[Category: Mannan endo-1,4-beta-mannosidase]]
[[Category: Large Structures]]
[[Category: Ma, Y.]]
[[Category: Ma Y]]
[[Category: Xue, Y.]]
[[Category: Xue Y]]
[[Category: Zhang, Y.]]
[[Category: Zhang Y]]
[[Category: Hydrolase]]
[[Category: Tim barrel]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 26 20:29:50 2008''
Retrieved from "https://proteopedia.org/3civ"