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{{Seed}}
[[Image:2vh0.jpg|left|200px]]


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==Structure and property based design of factor Xa inhibitors:biaryl pyrrolidin-2-ones incorporating basic heterocyclic motifs==
The line below this paragraph, containing "STRUCTURE_2vh0", creates the "Structure Box" on the page.
<StructureSection load='2vh0' size='340' side='right'caption='[[2vh0]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2vh0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VH0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VH0 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GSI:2-(5-CHLOROTHIOPHEN-2-YL)-N-[(3S)-1-(4-{2-[(DIMETHYLAMINO)METHYL]-1H-IMIDAZOL-1-YL}-2-FLUOROPHENYL)-2-OXOPYRROLIDIN-3-YL]ETHANESULFONAMIDE'>GSI</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
{{STRUCTURE_2vh0|  PDB=2vh0  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vh0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vh0 OCA], [https://pdbe.org/2vh0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vh0 RCSB], [https://www.ebi.ac.uk/pdbsum/2vh0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vh0 ProSAT]</span></td></tr>
</table>
== Disease ==
[https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN] Defects in F10 are the cause of factor X deficiency (FA10D) [MIM:[https://omim.org/entry/227600 227600]. A hemorrhagic disease with variable presentation. Affected individuals can manifest prolonged nasal and mucosal hemorrhage, menorrhagia, hematuria, and occasionally hemarthrosis. Some patients do not have clinical bleeding diathesis.<ref>PMID:2790181</ref> <ref>PMID:1973167</ref> <ref>PMID:1985698</ref> <ref>PMID:7669671</ref> <ref>PMID:8529633</ref> <ref>PMID:7860069</ref> <ref>PMID:8845463</ref> <ref>PMID:8910490</ref> <ref>PMID:10468877</ref> <ref>PMID:10746568</ref> <ref>PMID:10739379</ref> <ref>PMID:11248282</ref> <ref>PMID:11728527</ref> <ref>PMID:12945883</ref> <ref>PMID:15650540</ref> <ref>PMID:17393015</ref> <ref>PMID:19135706</ref>
== Function ==
[https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN] Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting.
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Structure and property based drug design was exploited in the synthesis of sulfonamidopyrrolidin-2-one-based factor Xa (fXa) inhibitors, incorporating basic biaryl P4 groups, producing highly potent inhibitors with significant anticoagulant activities and encouraging oral pharmacokinetic profiles.


===STRUCTURE AND PROPERTY BASED DESIGN OF FACTOR XA INHIBITORS: BIARYL PYRROLIDIN-2-ONES INCORPORATING BASIC HETEROCYCLIC MOTIFS===
Structure and property based design of factor Xa inhibitors: biaryl pyrrolidin-2-ones incorporating basic heterocyclic motifs.,Young RJ, Borthwick AD, Brown D, Burns-Kurtis CL, Campbell M, Chan C, Charbaut M, Convery MA, Diallo H, Hortense E, Irving WR, Kelly HA, King NP, Kleanthous S, Mason AM, Pateman AJ, Patikis AN, Pinto IL, Pollard DR, Senger S, Shah GP, Toomey JR, Watson NS, Weston HE, Zhou P Bioorg Med Chem Lett. 2008 Jan 1;18(1):28-33. Epub 2007 Nov 13. PMID:18053714<ref>PMID:18053714</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 2vh0" style="background-color:#fffaf0;"></div>


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==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_18053714}}, adds the Publication Abstract to the page
*[[Factor Xa|Factor Xa]]
(as it appears on PubMed at http://www.pubmed.gov), where 18053714 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_18053714}}
__TOC__
 
</StructureSection>
==About this Structure==
2VH0 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VH0 OCA].
 
==Reference==
Structure and property based design of factor Xa inhibitors: biaryl pyrrolidin-2-ones incorporating basic heterocyclic motifs., Young RJ, Borthwick AD, Brown D, Burns-Kurtis CL, Campbell M, Chan C, Charbaut M, Convery MA, Diallo H, Hortense E, Irving WR, Kelly HA, King NP, Kleanthous S, Mason AM, Pateman AJ, Patikis AN, Pinto IL, Pollard DR, Senger S, Shah GP, Toomey JR, Watson NS, Weston HE, Zhou P, Bioorg Med Chem Lett. 2008 Jan 1;18(1):28-33. Epub 2007 Nov 13. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18053714 18053714]
[[Category: Coagulation factor Xa]]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Borthwick, A D.]]
[[Category: Large Structures]]
[[Category: Brown, D.]]
[[Category: Borthwick AD]]
[[Category: Burns-Kurtis, C L.]]
[[Category: Brown D]]
[[Category: Campbell, M.]]
[[Category: Burns-Kurtis CL]]
[[Category: Chan, C.]]
[[Category: Campbell M]]
[[Category: Charbaut, M.]]
[[Category: Chan C]]
[[Category: Convery, M A.]]
[[Category: Charbaut M]]
[[Category: Diallo, H.]]
[[Category: Convery MA]]
[[Category: Hortense, E.]]
[[Category: Diallo H]]
[[Category: Irving, W R.]]
[[Category: Hortense E]]
[[Category: Kelly, H A.]]
[[Category: Irving WR]]
[[Category: King, N P.]]
[[Category: Kelly HA]]
[[Category: Kleanthous, S.]]
[[Category: King NP]]
[[Category: Mason, A M.]]
[[Category: Kleanthous S]]
[[Category: Pateman, A J.]]
[[Category: Mason AM]]
[[Category: Patikis, A.]]
[[Category: Pateman AJ]]
[[Category: Pinto, I L.]]
[[Category: Patikis A]]
[[Category: Pollard, D R.]]
[[Category: Pinto IL]]
[[Category: Senger, S.]]
[[Category: Pollard DR]]
[[Category: Shah, G P.]]
[[Category: Senger S]]
[[Category: Toomey, J R.]]
[[Category: Shah GP]]
[[Category: Watson, N S.]]
[[Category: Toomey JR]]
[[Category: Weston, H E.]]
[[Category: Watson NS]]
[[Category: Young, R J.]]
[[Category: Weston HE]]
[[Category: Zhou, P.]]
[[Category: Young RJ]]
[[Category: Blood coagulation]]
[[Category: Zhou P]]
[[Category: Calcium]]
[[Category: Cleavage on pair of basic residue]]
[[Category: Complex]]
[[Category: Egf-like domain]]
[[Category: Gamma-carboxyglutamic acid]]
[[Category: Glycoprotein]]
[[Category: Hydrolase]]
[[Category: Hydroxylation]]
[[Category: Polymorphism]]
[[Category: Protease]]
[[Category: Serine protease]]
[[Category: Zymogen]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Nov 27 13:31:03 2008''

Latest revision as of 09:32, 6 November 2024

Structure and property based design of factor Xa inhibitors:biaryl pyrrolidin-2-ones incorporating basic heterocyclic motifs

2vh0, resolution 1.70Å

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