3dl8: Difference between revisions

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{{Seed}}
[[Image:3dl8.jpg|left|200px]]


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==Structure of the complex of aquifex aeolicus SecYEG and bacillus subtilis SecA==
The line below this paragraph, containing "STRUCTURE_3dl8", creates the "Structure Box" on the page.
<StructureSection load='3dl8' size='340' side='right'caption='[[3dl8]], [[Resolution|resolution]] 7.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dl8]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus] and [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DL8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DL8 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 7.5&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dl8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dl8 OCA], [https://pdbe.org/3dl8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dl8 RCSB], [https://www.ebi.ac.uk/pdbsum/3dl8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dl8 ProSAT]</span></td></tr>
{{STRUCTURE_3dl8| PDB=3dl8 |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/SECA_BACSU SECA_BACSU] Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane (By similarity).[HAMAP-Rule:MF_01382]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dl/3dl8_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dl8 ConSurf].
<div style="clear:both"></div>


===Structure of the complex of aquifex aeolicus SecYEG and bascillus subtilis SecA===
==See Also==
 
*[[Preprotein translocase 3D structures|Preprotein translocase 3D structures]]
 
*[[SecA|SecA]]
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{{ABSTRACT_PUBMED_18923516}}
 
==About this Structure==
3DL8 is a 8 chains structure of sequences from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus] and [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DL8 OCA].
 
==Reference==
Structure of a complex of the ATPase SecA and the protein-translocation channel., Zimmer J, Nam Y, Rapoport TA, Nature. 2008 Oct 16;455(7215):936-43. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18923516 18923516]
[[Category: Aquifex aeolicus]]
[[Category: Aquifex aeolicus]]
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: Pdbx_ordinal=, <PDBx:audit_author.]]
[[Category: Large Structures]]
[[Category: Atp-binding]]
[[Category: Nam Y]]
[[Category: Cell membrane]]
[[Category: Rapoport TA]]
[[Category: Cytoplasm]]
[[Category: Zimmer J]]
[[Category: Membrane]]
[[Category: Metal-binding]]
[[Category: Nucleotide-binding]]
[[Category: Protein transport]]
[[Category: Reca-type atpase membrane protein translocation protein-protein complex]]
[[Category: Translocation]]
[[Category: Transmembrane]]
[[Category: Transport]]
[[Category: Zinc]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Dec  5 09:37:34 2008''
Retrieved from "https://proteopedia.org/3dl8"