2w6l: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:2w6l.jpg|left|200px]]


<!--
==The crystal structure at 1.7 A resolution of CobE, a protein from the cobalamin (vitamin B12) biosynthetic pathway==
The line below this paragraph, containing "STRUCTURE_2w6l", creates the "Structure Box" on the page.
<StructureSection load='2w6l' size='340' side='right'caption='[[2w6l]], [[Resolution|resolution]] 1.89&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2w6l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W6L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W6L FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.89&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_2w6l|  PDB=2w6l |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w6l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w6l OCA], [https://pdbe.org/2w6l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w6l RCSB], [https://www.ebi.ac.uk/pdbsum/2w6l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w6l ProSAT]</span></td></tr>
 
</table>
===THE CRYSTAL STRUCTURE AT 1.7 A RESOLUTION OF COBE, A PROTEIN FROM THE COBALAMIN (VITAMIN B12) BIOSYNTHETIC PATHWAY===
== Function ==
 
[https://www.uniprot.org/uniprot/Q9HZQ0_PSEAE Q9HZQ0_PSEAE]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2W6L is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W6L OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w6/2w6l_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2w6l ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Deery, E.]]
[[Category: Deery E]]
[[Category: Mcgoldrick, H.]]
[[Category: McGoldrick H]]
[[Category: Murzin, A G.]]
[[Category: Murzin AG]]
[[Category: Smith, D.]]
[[Category: Smith D]]
[[Category: Vevodova, J.]]
[[Category: Vevodova J]]
[[Category: Warren, M J.]]
[[Category: Warren MJ]]
[[Category: Wilson, K S.]]
[[Category: Wilson KS]]
[[Category: Biosynthetic protein]]
[[Category: Cobalamin]]
[[Category: Cobe]]
[[Category: Novel fold]]
[[Category: Precorrin]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Vitamin b12]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 31 10:11:10 2008''