1th5: Difference between revisions

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{{Seed}}
[[Image:1th5.png|left|200px]]


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==Solution structure of C-terminal domain of NifU-like protein from Oryza sativa==
The line below this paragraph, containing "STRUCTURE_1th5", creates the "Structure Box" on the page.
<StructureSection load='1th5' size='340' side='right'caption='[[1th5]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1th5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TH5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TH5 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1th5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1th5 OCA], [https://pdbe.org/1th5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1th5 RCSB], [https://www.ebi.ac.uk/pdbsum/1th5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1th5 ProSAT]</span></td></tr>
{{STRUCTURE_1th5|  PDB=1th5  |  SCENE=  }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/NIFU1_ORYSJ NIFU1_ORYSJ] Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/th/1th5_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1th5 ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
NifU-like proteins are a highly conserved protein that serves as the scaffold for assembly of Fe-S clusters. Chloroplastic NifU-like proteins have tandem NifU like domains, named domain I and domain II. Although the amino acid sequences of these domains are very similar to each other, the predicted functional region for the Fe-S cluster assembly, the CXXC motif, exists only in domain I. The structure of the domain II of chloroplastic NifU-like protein OsNifU1A has an alpha-beta sandwich structure containing two alpha helices located on one side of the beta-sheet. The electrostatic surface potential of OsNifU1A domain II is predominantly positively charged. Chloroplastic NifU-like proteins are targeted to ferredoxin for transferring the Fe-S cluster. The ferredoxin presents an overall negatively charged surface, which may evoke an electrostatic association with OsNifU1A domain II.


===Solution structure of C-terminal domain of NifU-like protein from Oryza sativa===
The NMR structure of the domain II of a chloroplastic NifU-like protein OsNifU1A.,Kumeta H, Ogura K, Asayama M, Katoh S, Katoh E, Teshima K, Inagaki F J Biomol NMR. 2007 Jun;38(2):161-4. Epub 2007 Apr 13. PMID:17431550<ref>PMID:17431550</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 1th5" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 17431550 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_17431550}}
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</StructureSection>
==About this Structure==
[[Category: Large Structures]]
1TH5 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermomicrobium_roseum Thermomicrobium roseum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TH5 OCA].
[[Category: Oryza sativa]]
 
[[Category: Asayama M]]
==Reference==
[[Category: Inagaki F]]
The NMR structure of the domain II of a chloroplastic NifU-like protein OsNifU1A., Kumeta H, Ogura K, Asayama M, Katoh S, Katoh E, Teshima K, Inagaki F, J Biomol NMR. 2007 Jun;38(2):161-4. Epub 2007 Apr 13. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17431550 17431550]
[[Category: Katoh E]]
[[Category: Thermomicrobium roseum]]
[[Category: Katoh S]]
[[Category: Asayama, M.]]
[[Category: Kumeta H]]
[[Category: Inagaki, F.]]
[[Category: Ogura K]]
[[Category: Katoh, E.]]
[[Category: Katoh, S.]]
[[Category: Kumeta, H.]]
[[Category: Ogura, K.]]
[[Category: Iron-sulfur cluster binding]]
[[Category: Program for rice genome research]]
[[Category: Structural genomic]]
[[Category: Unknown function]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan  7 08:16:54 2009''

Latest revision as of 18:16, 29 May 2024

Solution structure of C-terminal domain of NifU-like protein from Oryza sativa

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