3fd3: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3fd3.jpg|left|200px]]


<!--
==Structure of the C-terminal domains of a LysR family protein from Agrobacterium tumefaciens str. C58.==
The line below this paragraph, containing "STRUCTURE_3fd3", creates the "Structure Box" on the page.
<StructureSection load='3fd3' size='340' side='right'caption='[[3fd3]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3fd3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FD3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FD3 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL'>P33</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
{{STRUCTURE_3fd3|  PDB=3fd3  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fd3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fd3 OCA], [https://pdbe.org/3fd3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fd3 RCSB], [https://www.ebi.ac.uk/pdbsum/3fd3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fd3 ProSAT], [https://www.topsan.org/Proteins/MCSG/3fd3 TOPSAN]</span></td></tr>
 
</table>
===Structure of the C-terminal domains of a LysR family protein from Agrobacterium tumefaciens str. C58.===
== Function ==
 
[https://www.uniprot.org/uniprot/A9CJQ0_AGRFC A9CJQ0_AGRFC]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3FD3 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FD3 OCA].  
Check<jmol>
[[Category: Agrobacterium tumefaciens str. c58]]
  <jmolCheckbox>
[[Category: Cuff, M E.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fd/3fd3_consurf.spt"</scriptWhenChecked>
[[Category: Edwards, A.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Joachimiak, A.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
  </jmolCheckbox>
[[Category: Savchenko, A.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fd3 ConSurf].
[[Category: Xu, X.]]
<div style="clear:both"></div>
[[Category: Zeng, H.]]
__TOC__
[[Category: Agrobacterium tumefacien]]
</StructureSection>
[[Category: Dna-binding]]
[[Category: Agrobacterium fabrum str. C58]]
[[Category: Lysr]]
[[Category: Large Structures]]
[[Category: Mcsg]]
[[Category: Cuff ME]]
[[Category: Midwest center for structural genomic]]
[[Category: Edwards A]]
[[Category: Protein structure initiative]]
[[Category: Joachimiak A]]
[[Category: Psi-2]]
[[Category: Savchenko A]]
[[Category: Structural genomic]]
[[Category: Xu X]]
[[Category: Transcription]]
[[Category: Zeng H]]
[[Category: Transcription regulation]]
[[Category: Transcription regulator]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb  4 11:39:11 2009''

Latest revision as of 09:07, 30 October 2024

Structure of the C-terminal domains of a LysR family protein from Agrobacterium tumefaciens str. C58.

3fd3, resolution 1.70Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=3fd3&oldid=4248278"