3c7h: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(9 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3c7h.png|left|200px]]


<!--
==Crystal structure of glycoside hydrolase family 43 arabinoxylan arabinofuranohydrolase from Bacillus subtilis in complex with AXOS-4-0.5.==
The line below this paragraph, containing "STRUCTURE_3c7h", creates the "Structure Box" on the page.
<StructureSection load='3c7h' size='340' side='right'caption='[[3c7h]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3c7h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C7H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C7H FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PRD_900117:4beta-beta-xylotriose'>PRD_900117</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
{{STRUCTURE_3c7h|  PDB=3c7h  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c7h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c7h OCA], [https://pdbe.org/3c7h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c7h RCSB], [https://www.ebi.ac.uk/pdbsum/3c7h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c7h ProSAT]</span></td></tr>
 
</table>
===Crystal structure of glycoside hydrolase family 43 arabinoxylan arabinofuranohydrolase from Bacillus subtilis in complex with AXOS-4-0.5.===
== Function ==
 
[https://www.uniprot.org/uniprot/XYND_BACSU XYND_BACSU] Cleaves arabinose units from O-2- or O-3-monosubstituted xylose residues, thereby assisting in arabinoxylan (AX) and short-chain arabinoxylo-oligosaccharide (AXOS) degradation. Is more active on wheat bran AXOS than on wheat water-extractable AX and rye water-extractable AX. Does not display endoxylanase, xylosidase or arabinanase activity.<ref>PMID:17426966</ref>  
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_18980579}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 18980579 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c7/3c7h_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_18980579}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
3C7H is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C7H OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c7h ConSurf].
 
<div style="clear:both"></div>
==Reference==
== References ==
<ref group="xtra">PMID:18980579</ref><references group="xtra"/>
<references/>
[[Category: Alpha-N-arabinofuranosidase]]
__TOC__
</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: Bourgois, T M.]]
[[Category: Large Structures]]
[[Category: Campenhout, S Van.]]
[[Category: Bourgois TM]]
[[Category: Courtin, C M.]]
[[Category: Courtin CM]]
[[Category: Delcour, J A.]]
[[Category: Delcour JA]]
[[Category: Rabijns, A.]]
[[Category: Rabijns A]]
[[Category: Strelkov, S V.]]
[[Category: Strelkov SV]]
[[Category: Vandermarliere, E.]]
[[Category: Van Campenhout S]]
[[Category: Volckaert, G.]]
[[Category: Vandermarliere E]]
[[Category: Winn, M D.]]
[[Category: Volckaert G]]
[[Category: 5-bladed beta-propeller fold]]
[[Category: Winn MD]]
[[Category: Beta-sandwich]]
[[Category: Hydrolase]]
[[Category: Xylan degradation]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 11 11:21:34 2009''
Retrieved from "https://proteopedia.org/3c7h"