1xer: Difference between revisions

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New page: left|200px<br /><applet load="1xer" size="450" color="white" frame="true" align="right" spinBox="true" caption="1xer, resolution 2.0Å" /> '''STRUCTURE OF FERREDOX...
 
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[[Image:1xer.jpg|left|200px]]<br /><applet load="1xer" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1xer, resolution 2.0&Aring;" />
'''STRUCTURE OF FERREDOXIN'''<br />


==About this Structure==
==STRUCTURE OF FERREDOXIN==
1XER is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii] with ZN and F3S as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1XER OCA].  
<StructureSection load='1xer' size='340' side='right'caption='[[1xer]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1xer]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii_str._7 Sulfurisphaera tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XER FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MLZ:N-METHYL-LYSINE'>MLZ</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xer OCA], [https://pdbe.org/1xer PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xer RCSB], [https://www.ebi.ac.uk/pdbsum/1xer PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xer ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/FER1_SULTO FER1_SULTO] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xe/1xer_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xer ConSurf].
<div style="clear:both"></div>


==Reference==
==See Also==
Novel zinc-binding centre in thermoacidophilic archaeal ferredoxins., Fujii T, Hata Y, Wakagi T, Tanaka N, Oshima T, Nat Struct Biol. 1996 Oct;3(10):834-7. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=8836097 8836097]
*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
[[Category: Single protein]]
__TOC__
[[Category: Sulfolobus tokodaii]]
</StructureSection>
[[Category: Fujii, T.]]
[[Category: Large Structures]]
[[Category: Hata, Y.]]
[[Category: Sulfurisphaera tokodaii str. 7]]
[[Category: Moriyama, H.]]
[[Category: Fujii T]]
[[Category: Oshima, T.]]
[[Category: Hata Y]]
[[Category: Tanaka, N.]]
[[Category: Moriyama H]]
[[Category: Wakagi, T.]]
[[Category: Oshima T]]
[[Category: F3S]]
[[Category: Tanaka N]]
[[Category: ZN]]
[[Category: Wakagi T]]
[[Category: duplication]]
[[Category: electron transport]]
[[Category: iron-sulfur]]
 
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