1xe7: Difference between revisions

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{{Seed}}
[[Image:1xe7.png|left|200px]]


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==Crystal structure of the YML079w protein from Saccharomyces cerevisiae reveals a new sequence family of the jelly roll fold==
The line below this paragraph, containing "STRUCTURE_1xe7", creates the "Structure Box" on the page.
<StructureSection load='1xe7' size='340' side='right'caption='[[1xe7]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1xe7]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XE7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XE7 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GUN:GUANINE'>GUN</scene></td></tr>
{{STRUCTURE_1xe7|  PDB=1xe7  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xe7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xe7 OCA], [https://pdbe.org/1xe7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xe7 RCSB], [https://www.ebi.ac.uk/pdbsum/1xe7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xe7 ProSAT]</span></td></tr>
 
</table>
===Crystal structure of the YML079w protein from Saccharomyces cerevisiae reveals a new sequence family of the jelly roll fold===
== Function ==
 
[https://www.uniprot.org/uniprot/YMH9_YEAST YMH9_YEAST]
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_15608122}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 15608122 is the PubMed ID number.
  <jmolCheckbox>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xe/1xe7_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_15608122}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1XE7 is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XE7 OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xe7 ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:15608122</ref><references group="xtra"/>
</StructureSection>
[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Collinet, B.]]
[[Category: Collinet B]]
[[Category: Graille, M.]]
[[Category: Graille M]]
[[Category: Janin, J.]]
[[Category: Janin J]]
[[Category: Leulliot, N.]]
[[Category: Leulliot N]]
[[Category: Meyer, P.]]
[[Category: Li de La Sierra-Gallay I]]
[[Category: Quevillon-Cheruel, S.]]
[[Category: Meyer P]]
[[Category: Sierra-Gallay, I Li de La.]]
[[Category: Quevillon-Cheruel S]]
[[Category: Sorel, I.]]
[[Category: Sorel I]]
[[Category: Tilbeurgh, H Van.]]
[[Category: Van Tilbeurgh H]]
[[Category: Zhou, C Z.]]
[[Category: Zhou C-Z]]
[[Category: Cupin superfamily]]
[[Category: Jelly roll motif]]
[[Category: S. cerevisiae]]
[[Category: Structural genomic]]
[[Category: Yml079wp]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 12:31:29 2009''

Latest revision as of 08:49, 14 February 2024

Crystal structure of the YML079w protein from Saccharomyces cerevisiae reveals a new sequence family of the jelly roll fold

1xe7, resolution 1.75Å

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