1pdp: Difference between revisions

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{{Seed}}
[[Image:1pdp.png|left|200px]]


<!--
==Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction==
The line below this paragraph, containing "STRUCTURE_1pdp", creates the "Structure Box" on the page.
<SX load='1pdp' size='340' side='right' viewer='molstar' caption='[[1pdp]], [[Resolution|resolution]] 12.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1pdp]] is a 18 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PDP FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 12&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pdp OCA], [https://pdbe.org/1pdp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pdp RCSB], [https://www.ebi.ac.uk/pdbsum/1pdp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pdp ProSAT]</span></td></tr>
{{STRUCTURE_1pdp|  PDB=1pdp  |  SCENE=  }}
</table>
 
== Function ==
===Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction===
[https://www.uniprot.org/uniprot/BP09_BPT4 BP09_BPT4] Baseplate protein that connects the long tail fibers to the baseplate and probably triggers the tail contraction after virus attachment to a host cell (PubMed:10545330). Involved in the tail assembly (PubMed:21129200).<ref>PMID:10545330</ref> <ref>PMID:21129200</ref>  
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
<!--
Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_12923574}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 12923574 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/1pdp_consurf.spt"</scriptWhenChecked>
-->
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_12923574}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pdp ConSurf].
1PDP is a 18 chains structure of sequences from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PDP OCA].  
<div style="clear:both"></div>
 
== References ==
==Reference==
<references/>
<ref group="xtra">PMID:12923574</ref><references group="xtra"/>
__TOC__
[[Category: Enterobacteria phage t4]]
</SX>
[[Category: Arisaka, F.]]
[[Category: Escherichia virus T4]]
[[Category: Chipman, P R.]]
[[Category: Large Structures]]
[[Category: Kanamaru, S.]]
[[Category: Arisaka F]]
[[Category: Kostyuchenko, V A.]]
[[Category: Chipman PR]]
[[Category: Leiman, P G.]]
[[Category: Kanamaru S]]
[[Category: Mesyanzhinov, V V.]]
[[Category: Kostyuchenko VA]]
[[Category: Raaij, M J.van.]]
[[Category: Leiman PG]]
[[Category: Rossmann, M G.]]
[[Category: Mesyanzhinov VV]]
[[Category: Structural protein]]
[[Category: Rossmann MG]]
 
[[Category: Van Raaij MJ]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 14:41:46 2009''
Retrieved from "https://proteopedia.org/1pdp"