3chw: Difference between revisions

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{{Seed}}
[[Image:3chw.png|left|200px]]


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==Complex of Dictyostelium discoideum Actin with Profilin and the Last Poly-Pro of Human VASP==
The line below this paragraph, containing "STRUCTURE_3chw", creates the "Structure Box" on the page.
<StructureSection load='3chw' size='340' side='right'caption='[[3chw]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3chw]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CHW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CHW FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HIC:4-METHYL-HISTIDINE'>HIC</scene></td></tr>
{{STRUCTURE_3chw|  PDB=3chw  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3chw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3chw OCA], [https://pdbe.org/3chw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3chw RCSB], [https://www.ebi.ac.uk/pdbsum/3chw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3chw ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/ACT1_DICDI ACT1_DICDI]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ch/3chw_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3chw ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
On starvation, Dictyostelium cells aggregate to form multicellular fruiting bodies containing spores that germinate when transferred to nutrient-rich medium. This developmental cycle correlates with the extent of actin phosphorylation at Tyr-53 (pY53-actin), which is low in vegetative cells but high in viable mature spores. Here we describe high-resolution crystal structures of pY53-actin and unphosphorylated actin in complexes with gelsolin segment 1 and profilin. In the structure of pY53-actin, the phosphate group on Tyr-53 makes hydrogen-bonding interactions with residues of the DNase I-binding loop (D-loop) of actin, resulting in a more stable conformation of the D-loop than in the unphosphorylated structures. A more rigidly folded D-loop may explain some of the previously described properties of pY53-actin, including its increased critical concentration for polymerization, reduced rates of nucleation and pointed end elongation, and weak affinity for DNase I. We show here that phosphorylation of Tyr-53 inhibits subtilisin cleavage of the D-loop and reduces the rate of nucleotide exchange on actin. The structure of profilin-Dictyostelium-actin is strikingly similar to previously determined structures of profilin-beta-actin and profilin-alpha-actin. By comparing this representative set of profilin-actin structures with other structures of actin, we highlight the effects of profilin on the actin conformation. In the profilin-actin complexes, subdomains 1 and 3 of actin close around profilin, producing a 4.7 degrees rotation of the two major domains of actin relative to each other. As a result, the nucleotide cleft becomes moderately more open in the profilin-actin complex, probably explaining the stimulation of nucleotide exchange on actin by profilin.


===Complex of Dictyostelium discoideum Actin with Profilin and the Last Poly-Pro of Human VASP===
Modulation of actin structure and function by phosphorylation of Tyr-53 and profilin binding.,Baek K, Liu X, Ferron F, Shu S, Korn ED, Dominguez R Proc Natl Acad Sci U S A. 2008 Aug 8. PMID:18689676<ref>PMID:18689676</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 3chw" style="background-color:#fffaf0;"></div>


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==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_18689676}}, adds the Publication Abstract to the page
*[[Actin 3D structures|Actin 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 18689676 is the PubMed ID number.
*[[Profilin 3D Structures|Profilin 3D Structures]]
-->
*[[Vasodilator-stimulated phosphoprotein|Vasodilator-stimulated phosphoprotein]]
{{ABSTRACT_PUBMED_18689676}}
== References ==
 
<references/>
==About this Structure==
__TOC__
3CHW is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum] and [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CHW OCA].
</StructureSection>
 
==Reference==
<ref group="xtra">PMID:18689676</ref><references group="xtra"/>
[[Category: Dictyostelium discoideum]]
[[Category: Dictyostelium discoideum]]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Baek, K.]]
[[Category: Large Structures]]
[[Category: Dominguez, R.]]
[[Category: Baek K]]
[[Category: Acetylation]]
[[Category: Dominguez R]]
[[Category: Actin]]
[[Category: Actin-binding]]
[[Category: Atp-binding]]
[[Category: Cell junction]]
[[Category: Cell projection]]
[[Category: Coiled coil]]
[[Category: Cytoplasm]]
[[Category: Cytoskeleton]]
[[Category: Dictyostelium discoideum]]
[[Category: Membrane]]
[[Category: Methyl histidine]]
[[Category: Nucleotide-binding]]
[[Category: Phosphoprotein]]
[[Category: Poly-proline]]
[[Category: Profilin]]
[[Category: Sh3-binding]]
[[Category: Structural protein]]
[[Category: Ternary complex]]
[[Category: Vasp]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 15:38:48 2009''
Retrieved from "https://proteopedia.org/3chw"