1ybd: Difference between revisions

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New page: left|200px<br /><applet load="1ybd" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ybd, resolution 2.60Å" /> '''Crystal structure an...
 
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[[Image:1ybd.gif|left|200px]]<br /><applet load="1ybd" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1ybd, resolution 2.60&Aring;" />
'''Crystal structure analysis of uridylate kinase from Neisseria meningitidis'''<br />


==About this Structure==
==Crystal structure analysis of uridylate kinase from Neisseria meningitidis==
1YBD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Neisseria_meningitidis Neisseria meningitidis] with FMT and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1YBD OCA].  
<StructureSection load='1ybd' size='340' side='right'caption='[[1ybd]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1ybd]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_meningitidis Neisseria meningitidis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YBD FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ybd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybd OCA], [https://pdbe.org/1ybd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ybd RCSB], [https://www.ebi.ac.uk/pdbsum/1ybd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ybd ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1ybd TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/PYRH_NEIMB PYRH_NEIMB] Catalyzes the reversible phosphorylation of UMP to UDP.<ref>PMID:17210578</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1ybd_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ybd ConSurf].
<div style="clear:both"></div>
 
==See Also==
*[[Uridylate kinase|Uridylate kinase]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Neisseria meningitidis]]
[[Category: Neisseria meningitidis]]
[[Category: Single protein]]
[[Category: Burley SK]]
[[Category: Burley, S.K.]]
[[Category: Kumaran D]]
[[Category: Kumaran, D.]]
[[Category: Swaminathan S]]
[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
[[Category: Swaminathan, S.]]
[[Category: FMT]]
[[Category: GOL]]
[[Category: alpha/beta/alpha fold]]
[[Category: hexamer]]
[[Category: kinase]]
[[Category: new york structural genomix research consortium]]
[[Category: nysgxrc]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomics]]
[[Category: t1843]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 06:39:59 2007''
Retrieved from "https://proteopedia.org/1ybd"