2pp8: Difference between revisions

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{{Seed}}
[[Image:2pp8.png|left|200px]]


<!--
==Formate bound to oxidized wild type AfNiR==
The line below this paragraph, containing "STRUCTURE_2pp8", creates the "Structure Box" on the page.
<StructureSection load='2pp8' size='340' side='right'caption='[[2pp8]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2pp8]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Alcaligenes_faecalis Alcaligenes faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PP8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PP8 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
{{STRUCTURE_2pp8| PDB=2pp8 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pp8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pp8 OCA], [https://pdbe.org/2pp8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pp8 RCSB], [https://www.ebi.ac.uk/pdbsum/2pp8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pp8 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/NIR_ALCFA NIR_ALCFA]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/2pp8_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pp8 ConSurf].
<div style="clear:both"></div>


===Formate bound to oxidized wild type AfNiR===
==See Also==
 
*[[Nitrite reductase 3D structures|Nitrite reductase 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_18358002}}, adds the Publication Abstract to the page
(as it appears on PubMed at http://www.pubmed.gov), where 18358002 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_18358002}}
 
==About this Structure==
2PP8 is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Alcaligenes_faecalis Alcaligenes faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PP8 OCA].
 
==Reference==
<ref group="xtra">PMID:18358002</ref><references group="xtra"/>
[[Category: Alcaligenes faecalis]]
[[Category: Alcaligenes faecalis]]
[[Category: Eltis, L D.]]
[[Category: Large Structures]]
[[Category: Murphy, M E.P.]]
[[Category: Eltis LD]]
[[Category: Tocheva, E I.]]
[[Category: Murphy MEP]]
[[Category: Bacteria]]
[[Category: Tocheva EI]]
[[Category: Copper]]
[[Category: Denitrification]]
[[Category: Nitrite reductase]]
[[Category: Oxidoreductase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 16:26:19 2009''
Retrieved from "https://proteopedia.org/2pp8"