1r76: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(9 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:1r76.png|left|200px]]


<!--
==Structure of a pectate lyase from Azospirillum irakense==
The line below this paragraph, containing "STRUCTURE_1r76", creates the "Structure Box" on the page.
<StructureSection load='1r76' size='340' side='right'caption='[[1r76]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1r76]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Niveispirillum_irakense Niveispirillum irakense]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R76 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R76 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.65&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene></td></tr>
{{STRUCTURE_1r76|  PDB=1r76  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r76 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r76 OCA], [https://pdbe.org/1r76 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r76 RCSB], [https://www.ebi.ac.uk/pdbsum/1r76 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r76 ProSAT]</span></td></tr>
 
</table>
===Structure of a pectate lyase from Azospirillum irakense===
== Function ==
 
[https://www.uniprot.org/uniprot/Q9X592_NIVIR Q9X592_NIVIR]  
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_15159558}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 15159558 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r7/1r76_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_15159558}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1R76 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Azospirillum_irakense Azospirillum irakense]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R76 OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r76 ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:15159558</ref><references group="xtra"/>
</StructureSection>
[[Category: Azospirillum irakense]]
[[Category: Large Structures]]
[[Category: Pectate lyase]]
[[Category: Niveispirillum irakense]]
[[Category: Armas, H Novoa de.]]
[[Category: De Ranter C]]
[[Category: Broek, A Vande.]]
[[Category: Desair J]]
[[Category: Desair, J.]]
[[Category: Novoa de Armas H]]
[[Category: Rabijns, A.]]
[[Category: Rabijns A]]
[[Category: Ranter, C De.]]
[[Category: Vande Broek A]]
[[Category: Vanderleyden, J.]]
[[Category: Vanderleyden J]]
[[Category: Verboven, C.]]
[[Category: Verboven C]]
[[Category: A-helical structure]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 20:07:05 2009''
Retrieved from "https://proteopedia.org/1r76"