1wmd: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(10 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:1wmd.png|left|200px]]


<!--
==Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (1.30 angstrom, 100 K)==
The line below this paragraph, containing "STRUCTURE_1wmd", creates the "Structure Box" on the page.
<StructureSection load='1wmd' size='340' side='right'caption='[[1wmd]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1wmd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._KSM-KP43 Bacillus sp. KSM-KP43]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WMD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WMD FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DIO:1,4-DIETHYLENE+DIOXIDE'>DIO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1wmd|  PDB=1wmd  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wmd OCA], [https://pdbe.org/1wmd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wmd RCSB], [https://www.ebi.ac.uk/pdbsum/1wmd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wmd ProSAT]</span></td></tr>
 
</table>
===Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (1.30 angstrom, 100 K)===
== Function ==
 
[https://www.uniprot.org/uniprot/Q93UV9_9BACI Q93UV9_9BACI]  
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_15342641}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 15342641 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wm/1wmd_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_15342641}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1WMD is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WMD OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wmd ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:15342641</ref><ref group="xtra">PMID:11320315</ref><references group="xtra"/>
</StructureSection>
[[Category: Bacteria]]
[[Category: Bacillus sp. KSM-KP43]]
[[Category: Fujihashi, M.]]
[[Category: Large Structures]]
[[Category: Horikoshi, K.]]
[[Category: Fujihashi M]]
[[Category: Ito, S.]]
[[Category: Horikoshi K]]
[[Category: Kita, A.]]
[[Category: Ito S]]
[[Category: Miki, K.]]
[[Category: Kita A]]
[[Category: Nonaka, T.]]
[[Category: Miki K]]
[[Category: Saeki, K.]]
[[Category: Nonaka T]]
[[Category: Alpha-beta hydrolase fold]]
[[Category: Saeki K]]
[[Category: Jelly-roll beta-barrel]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 20:21:25 2009''
Retrieved from "https://proteopedia.org/1wmd"