3dmg: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3dmg.png|left|200px]]


<!--
==T. Thermophilus 16S rRNA N2 G1207 methyltransferase (RsmC) in complex with AdoHcy==
The line below this paragraph, containing "STRUCTURE_3dmg", creates the "Structure Box" on the page.
<StructureSection load='3dmg' size='340' side='right'caption='[[3dmg]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dmg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DMG FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3dmg|  PDB=3dmg  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dmg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dmg OCA], [https://pdbe.org/3dmg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dmg RCSB], [https://www.ebi.ac.uk/pdbsum/3dmg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dmg ProSAT]</span></td></tr>
 
</table>
===T. Thermophilus 16S rRNA N2 G1207 methyltransferase (RsmC) in complex with AdoHcy===
== Function ==
 
[https://www.uniprot.org/uniprot/Q5SKW0_THET8 Q5SKW0_THET8]  
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_18667428}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 18667428 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dmg_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_18667428}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
3DMG is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMG OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dmg ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:18667428</ref><references group="xtra"/>
</StructureSection>
[[Category: Thermus thermophilus]]
[[Category: Large Structures]]
[[Category: Dahlberg, A E.]]
[[Category: Thermus thermophilus HB8]]
[[Category: Demirci, H.]]
[[Category: Dahlberg AE]]
[[Category: Gregory, S T.]]
[[Category: Demirci H]]
[[Category: Jogl, G.]]
[[Category: Gregory ST]]
[[Category: 16s rrna methyltransferase]]
[[Category: Jogl G]]
[[Category: Methyltransferase]]
[[Category: Monomethyltranserase]]
[[Category: N2 g1207 methyltransferase]]
[[Category: S-adenosyl-l-homocysteine]]
[[Category: Transferase]]
[[Category: Translation]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 21:10:41 2009''

Latest revision as of 09:42, 21 February 2024

T. Thermophilus 16S rRNA N2 G1207 methyltransferase (RsmC) in complex with AdoHcy

3dmg, resolution 1.55Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=3dmg&oldid=4064285"