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New page: left|200px<br /><applet load="2a0f" size="450" color="white" frame="true" align="right" spinBox="true" caption="2a0f, resolution 2.9Å" /> '''Structure of D236A mu...
 
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[[Image:2a0f.gif|left|200px]]<br /><applet load="2a0f" size="450" color="white" frame="true" align="right" spinBox="true"
caption="2a0f, resolution 2.9&Aring;" />
'''Structure of D236A mutant E. coli Aspartate Transcarbamoylase in presence of Phosphonoacetamide at 2.90 A resolution'''<br />


==Overview==
==Structure of D236A mutant E. coli Aspartate Transcarbamoylase in presence of Phosphonoacetamide at 2.90 A resolution==
Snapshots of the catalytic cycle of the allosteric enzyme aspartate, transcarbamoylase have been obtained via X-ray crystallography. The enzyme, in the high-activity high-affinity R state contains two catalytic chains, in the asymmetric unit that are different. The active site in one chain is, empty, while the active site in the other chain contains an analog of the, first substrate to bind in the ordered mechanism of the reaction. Small, angle X-ray scattering shows that once the enzyme is converted to the R, state, by substrate binding, the enzyme remains in the R state until, substrates are exhausted. Thus, this structure represents the active form, of the enzyme trapped at two different stages in the catalytic cycle, before the substrates bind (or after the products are released), and after, the first substrate binds. Opening and closing of the catalytic chain, domains explains how the catalytic cycle occurs while the enzyme remains, globally in the R-quaternary structure.
<StructureSection load='2a0f' size='340' side='right'caption='[[2a0f]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2a0f]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A0F FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PCT:PHOSPHONOACETAMIDE'>PCT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a0f OCA], [https://pdbe.org/2a0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a0f RCSB], [https://www.ebi.ac.uk/pdbsum/2a0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a0f ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/PYRB_ECOLI PYRB_ECOLI]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/2a0f_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2a0f ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Snapshots of the catalytic cycle of the allosteric enzyme aspartate transcarbamoylase have been obtained via X-ray crystallography. The enzyme in the high-activity high-affinity R state contains two catalytic chains in the asymmetric unit that are different. The active site in one chain is empty, while the active site in the other chain contains an analog of the first substrate to bind in the ordered mechanism of the reaction. Small angle X-ray scattering shows that once the enzyme is converted to the R state, by substrate binding, the enzyme remains in the R state until substrates are exhausted. Thus, this structure represents the active form of the enzyme trapped at two different stages in the catalytic cycle, before the substrates bind (or after the products are released), and after the first substrate binds. Opening and closing of the catalytic chain domains explains how the catalytic cycle occurs while the enzyme remains globally in the R-quaternary structure.


==About this Structure==
Structure of the E.coli aspartate transcarbamoylase trapped in the middle of the catalytic cycle.,Stieglitz KA, Dusinberre KJ, Cardia JP, Tsuruta H, Kantrowitz ER J Mol Biol. 2005 Sep 16;352(2):478-86. PMID:16120448<ref>PMID:16120448</ref>
2A0F is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with ZN and PCT as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Aspartate_carbamoyltransferase Aspartate carbamoyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.3.2 2.1.3.2] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2A0F OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
Structure of the E.coli aspartate transcarbamoylase trapped in the middle of the catalytic cycle., Stieglitz KA, Dusinberre KJ, Cardia JP, Tsuruta H, Kantrowitz ER, J Mol Biol. 2005 Sep 16;352(2):478-86. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16120448 16120448]
</div>
[[Category: Aspartate carbamoyltransferase]]
<div class="pdbe-citations 2a0f" style="background-color:#fffaf0;"></div>
 
==See Also==
*[[Aspartate carbamoyltransferase 3D structures|Aspartate carbamoyltransferase 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Protein complex]]
[[Category: Large Structures]]
[[Category: Cardia, J.P.]]
[[Category: Cardia JP]]
[[Category: Dusinberre, K.J.]]
[[Category: Dusinberre KJ]]
[[Category: Kantrowitz, E.R.]]
[[Category: Kantrowitz ER]]
[[Category: Stieglitz, K.A.]]
[[Category: Stieglitz KA]]
[[Category: Tsuruta, H.]]
[[Category: Tsuruta H]]
[[Category: PCT]]
[[Category: ZN]]
[[Category: allosteric regulation]]
[[Category: alternate conformations]]
[[Category: catalytic cycle]]
[[Category: homotropic cooperativity]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 07:51:10 2007''