1ps6: Difference between revisions

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{{Seed}}
[[Image:1ps6.png|left|200px]]


<!--
==Crystal structure of E.coli PdxA==
The line below this paragraph, containing "STRUCTURE_1ps6", creates the "Structure Box" on the page.
<StructureSection load='1ps6' size='340' side='right'caption='[[1ps6]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1ps6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PS6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PS6 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4TP:4-HYDROXY-L-THREONINE-5-MONOPHOSPHATE'>4TP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_1ps6|  PDB=1ps6  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ps6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ps6 OCA], [https://pdbe.org/1ps6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ps6 RCSB], [https://www.ebi.ac.uk/pdbsum/1ps6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ps6 ProSAT]</span></td></tr>
 
</table>
===Crystal structure of E.coli PdxA===
== Function ==
 
[https://www.uniprot.org/uniprot/PDXA_ECOLI PDXA_ECOLI] Catalyzes the NAD(P)-dependent oxidation of 4-(phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).[REFERENCE:5]<ref>PMID:15026039</ref>
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_12896974}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 12896974 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ps/1ps6_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_12896974}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1PS6 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PS6 OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ps6 ConSurf].
 
<div style="clear:both"></div>
==Reference==
== References ==
<ref group="xtra">PMID:12896974</ref><references group="xtra"/>
<references/>
[[Category: 4-hydroxythreonine-4-phosphate dehydrogenase]]
__TOC__
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Banks, J.]]
[[Category: Large Structures]]
[[Category: Cane, D E.]]
[[Category: Banks J]]
[[Category: Cygler, M.]]
[[Category: Cane DE]]
[[Category: Li, Y.]]
[[Category: Cygler M]]
[[Category: Matte, A.]]
[[Category: Li Y]]
[[Category: Sivaraman, J.]]
[[Category: Matte A]]
[[Category: Crystal structure]]
[[Category: Sivaraman J]]
[[Category: Pdxa]]
[[Category: Plp]]
[[Category: Pyridoxal 5'-phosphate biosynthesis]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 02:17:05 2009''
Retrieved from "https://proteopedia.org/1ps6"