1xi1: Difference between revisions

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{{Seed}}
[[Image:1xi1.png|left|200px]]


<!--
==Phi29 DNA polymerase ssDNA complex, monoclinic crystal form==
The line below this paragraph, containing "STRUCTURE_1xi1", creates the "Structure Box" on the page.
<StructureSection load='1xi1' size='340' side='right'caption='[[1xi1]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1xi1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_virus_phi29 Bacillus virus phi29]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XI1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XI1 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
{{STRUCTURE_1xi1| PDB=1xi1 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xi1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xi1 OCA], [https://pdbe.org/1xi1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xi1 RCSB], [https://www.ebi.ac.uk/pdbsum/1xi1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xi1 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/DPOL_BPPH2 DPOL_BPPH2] This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xi/1xi1_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xi1 ConSurf].
<div style="clear:both"></div>


===Phi29 DNA polymerase ssDNA complex, monoclinic crystal form===
==See Also==
 
*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_15546620}}, adds the Publication Abstract to the page
[[Category: Bacillus virus phi29]]
(as it appears on PubMed at http://www.pubmed.gov), where 15546620 is the PubMed ID number.
[[Category: Large Structures]]
-->
[[Category: Berman AJ]]
{{ABSTRACT_PUBMED_15546620}}
[[Category: Blanco L]]
 
[[Category: Kamtekar S]]
==About this Structure==
[[Category: Lazaro JM]]
1XI1 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_phage_phi29 Bacillus phage phi29]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XI1 OCA].
[[Category: Salas M]]
 
[[Category: Steitz TA]]
==Reference==
[[Category: Wang J]]
<ref group="xtra">PMID:15546620</ref><references group="xtra"/>
[[Category: De Vega M]]
[[Category: Bacillus phage phi29]]
[[Category: DNA-directed DNA polymerase]]
[[Category: Berman, A J.]]
[[Category: Blanco, L.]]
[[Category: Kamtekar, S.]]
[[Category: Lazaro, J M.]]
[[Category: Salas, M.]]
[[Category: Steitz, T A.]]
[[Category: Vega, M de.]]
[[Category: Wang, J.]]
[[Category: Dna polymerase]]
[[Category: Processivity]]
[[Category: Protein-primed]]
[[Category: Replication]]
[[Category: Strand displacement]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 02:42:03 2009''

Latest revision as of 08:50, 14 February 2024

Phi29 DNA polymerase ssDNA complex, monoclinic crystal form

1xi1, resolution 2.20Å

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