2afb: Difference between revisions

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{{Seed}}
[[Image:2afb.png|left|200px]]


<!--
==Crystal structure of 2-dehydro-3- deoxygluconokinase (EC 2.7.1.45) (tm0067) from THERMOTOGA MARITIMA at 2.05 A resolution==
The line below this paragraph, containing "STRUCTURE_2afb", creates the "Structure Box" on the page.
<StructureSection load='2afb' size='340' side='right'caption='[[2afb]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2afb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1j5v 1j5v]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AFB FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2afb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afb OCA], [https://pdbe.org/2afb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2afb RCSB], [https://www.ebi.ac.uk/pdbsum/2afb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2afb ProSAT], [https://www.topsan.org/Proteins/JCSG/2afb TOPSAN]</span></td></tr>
{{STRUCTURE_2afb|  PDB=2afb  |  SCENE=  }}
</table>
 
== Function ==
===Crystal structure of 2-dehydro-3- deoxygluconokinase (EC 2.7.1.45) (tm0067) from THERMOTOGA MARITIMA at 2.05 A resolution===
[https://www.uniprot.org/uniprot/Q9WXS2_THEMA Q9WXS2_THEMA]  
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
2AFB is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermotoga_maritima_msb8 Thermotoga maritima msb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFB OCA].  
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/af/2afb_consurf.spt"</scriptWhenChecked>
==Reference==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<ref group="xtra">PMID:18004772</ref><references group="xtra"/>
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Thermotoga maritima msb8]]
  </jmolCheckbox>
[[Category: JCSG, Joint Center for Structural Genomics.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2afb ConSurf].
[[Category: 2-dehydro-3- deoxygluconokinase]]
<div style="clear:both"></div>
[[Category: Jcsg]]
__TOC__
[[Category: Joint center for structural genomic]]
</StructureSection>
[[Category: Pfkb family carbohydrate kinase]]
[[Category: Large Structures]]
[[Category: Protein structure initiative]]
[[Category: Thermotoga maritima MSB8]]
[[Category: Psi]]
[[Category: Structural genomic]]
[[Category: Tm0067]]
[[Category: Transferase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 02:44:17 2009''

Latest revision as of 06:43, 25 January 2023

Crystal structure of 2-dehydro-3- deoxygluconokinase (EC 2.7.1.45) (tm0067) from THERMOTOGA MARITIMA at 2.05 A resolution

2afb, resolution 2.05Å

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