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New page: left|200px<br /><applet load="2abm" size="450" color="white" frame="true" align="right" spinBox="true" caption="2abm, resolution 3.20Å" /> '''Crystal Structure of...
 
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[[Image:2abm.gif|left|200px]]<br /><applet load="2abm" size="450" color="white" frame="true" align="right" spinBox="true"
caption="2abm, resolution 3.20&Aring;" />
'''Crystal Structure of Aquaporin Z Tetramer Reveals both Open and Closed Water-conducting Channels'''<br />


==Overview==
==Crystal Structure of Aquaporin Z Tetramer Reveals both Open and Closed Water-conducting Channels==
AqpZ is a homotetramer of four water-conducting channels that facilitate, rapid water movements across the plasma membrane of Escherichia coli. Here, we report a 3.2 angstroms crystal structure of the tetrameric AqpZ, (tAqpZ). All channel-lining residues in the four monomeric channels are, found orientated in nearly identical positions with one marked exception, at the narrowest channel constriction, where the side chain of a highly, conserved Arg-189 adopts two distinct conformational orientations. In one, of the four monomers, the guanidino group of Arg-189 points toward the, periplasmic vestibule, opening up the constriction to accommodate the, binding of a water molecule through a tridentate H-bond. In the other, three monomers, the Arg-189 guanidino group bends over to form an H-bond, with carbonyl oxygen of the Thr-183, thus occluding the channel., Therefore, the tAqpZ structure reveals two distinct Arg-189 confirmations, associated with water permeation through the channel constrictions., Alternation between the two Arg-189 conformations disrupts continuous flow, of water, thus regulating the open probability of the water pore. Further, the difference in Arg-189 displacements is correlated with a strong, electron density found between the first transmembrane helices of two open, channels, suggesting that the observed Arg-189 conformations are, stabilized by asymmetrical subunit interactions in tAqpZ.
<StructureSection load='2abm' size='340' side='right'caption='[[2abm]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2abm]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ABM FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3PG:3-PHOSPHOGLYCERIC+ACID'>3PG</scene>, <scene name='pdbligand=AGA:(1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL+OCTANOATE'>AGA</scene>, <scene name='pdbligand=BGL:B-2-OCTYLGLUCOSIDE'>BGL</scene>, <scene name='pdbligand=PEE:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE'>PEE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=POQ:BIS(((3S,4S,5R,6R)-5-(ETHYL(PHOSPHORYLOXY))-3,4,6-TRIHYDROXY-TETRAHYDRO-2H-PYRAN-2-YL)METHYL)+HYDROGEN+PHOSPHATE'>POQ</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2abm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2abm OCA], [https://pdbe.org/2abm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2abm RCSB], [https://www.ebi.ac.uk/pdbsum/2abm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2abm ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/AQPZ_ECOLI AQPZ_ECOLI] Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity.<ref>PMID:10400575</ref> <ref>PMID:10518952</ref> <ref>PMID:11493683</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ab/2abm_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2abm ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
AqpZ is a homotetramer of four water-conducting channels that facilitate rapid water movements across the plasma membrane of Escherichia coli. Here we report a 3.2 angstroms crystal structure of the tetrameric AqpZ (tAqpZ). All channel-lining residues in the four monomeric channels are found orientated in nearly identical positions with one marked exception at the narrowest channel constriction, where the side chain of a highly conserved Arg-189 adopts two distinct conformational orientations. In one of the four monomers, the guanidino group of Arg-189 points toward the periplasmic vestibule, opening up the constriction to accommodate the binding of a water molecule through a tridentate H-bond. In the other three monomers, the Arg-189 guanidino group bends over to form an H-bond with carbonyl oxygen of the Thr-183, thus occluding the channel. Therefore, the tAqpZ structure reveals two distinct Arg-189 confirmations associated with water permeation through the channel constrictions. Alternation between the two Arg-189 conformations disrupts continuous flow of water, thus regulating the open probability of the water pore. Further, the difference in Arg-189 displacements is correlated with a strong electron density found between the first transmembrane helices of two open channels, suggesting that the observed Arg-189 conformations are stabilized by asymmetrical subunit interactions in tAqpZ.


==About this Structure==
Crystal structure of AqpZ tetramer reveals two distinct Arg-189 conformations associated with water permeation through the narrowest constriction of the water-conducting channel.,Jiang J, Daniels BV, Fu D J Biol Chem. 2006 Jan 6;281(1):454-60. Epub 2005 Oct 20. PMID:16239219<ref>PMID:16239219</ref>
2ABM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with BGL, PO4, POQ, PEE, 3PG and AGA as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2ABM OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
Crystal structure of AqpZ tetramer reveals two distinct Arg-189 conformations associated with water permeation through the narrowest constriction of the water-conducting channel., Jiang J, Daniels BV, Fu D, J Biol Chem. 2006 Jan 6;281(1):454-60. Epub 2005 Oct 20. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16239219 16239219]
</div>
<div class="pdbe-citations 2abm" style="background-color:#fffaf0;"></div>
 
==See Also==
*[[Aquaporin 3D structures|Aquaporin 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Daniels, B.V.]]
[[Category: Daniels BV]]
[[Category: Fu, D.]]
[[Category: Fu D]]
[[Category: Jiang, J.]]
[[Category: Jiang J]]
[[Category: 3PG]]
[[Category: AGA]]
[[Category: BGL]]
[[Category: PEE]]
[[Category: PO4]]
[[Category: POQ]]
[[Category: aquaporin]]
[[Category: membrane protein]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 08:02:20 2007''

Latest revision as of 07:22, 23 August 2023

Crystal Structure of Aquaporin Z Tetramer Reveals both Open and Closed Water-conducting Channels

2abm, resolution 3.20Å

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