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New page: left|200px<br /> <applet load="1vzi" size="450" color="white" frame="true" align="right" spinBox="true" caption="1vzi, resolution 1.15Å" /> '''STRUCTURE OF SUPERO...
 
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[[Image:1vzi.gif|left|200px]]<br />
<applet load="1vzi" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1vzi, resolution 1.15&Aring;" />
'''STRUCTURE OF SUPEROXIDE REDUCTASE BOUND TO FERROCYANIDE AND ACTIVE SITE EXPANSION UPON X-RAY INDUCED PHOTOREDUCTION'''<br />


==Overview==
==Structure of superoxide reductase bound to ferrocyanide and active site expansion upon X-ray induced photoreduction==
Some sulfate-reducing and microaerophilic bacteria rely on the enzyme, superoxide reductase (SOR) to eliminate the toxic superoxide anion radical, (O2*-). SOR catalyses the one-electron reduction of O2*- to hydrogen, peroxide at a nonheme ferrous iron center. The structures of, Desulfoarculus baarsii SOR (mutant E47A) alone and in complex with, ferrocyanide were solved to 1.15 and 1.7 A resolution, respectively. The, latter structure, the first ever reported of a complex between, ferrocyanide and a protein, reveals that this organo-metallic compound, entirely plugs the SOR active site, coordinating the active iron through a, bent cyano bridge. The subtle structural differences between the, mixed-valence and the fully reduced SOR-ferrocyanide adducts were, investigated by taking advantage ... [[http://ispc.weizmann.ac.il/pmbin/getpm?15341736 (full description)]]
<StructureSection load='1vzi' size='340' side='right'caption='[[1vzi]], [[Resolution|resolution]] 1.15&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1vzi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfarculus_baarsii Desulfarculus baarsii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VZI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VZI FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.15&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vzi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vzi OCA], [https://pdbe.org/1vzi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vzi RCSB], [https://www.ebi.ac.uk/pdbsum/1vzi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vzi ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/DFX_DESB2 DFX_DESB2] Catalyzes the one-electron reduction of superoxide anion radical to hydrogen peroxide at a nonheme ferrous iron center. Plays a fundamental role in case of oxidative stress via its superoxide detoxification activity.<ref>PMID:10617593</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vz/1vzi_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vzi ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Some sulfate-reducing and microaerophilic bacteria rely on the enzyme superoxide reductase (SOR) to eliminate the toxic superoxide anion radical (O2*-). SOR catalyses the one-electron reduction of O2*- to hydrogen peroxide at a nonheme ferrous iron center. The structures of Desulfoarculus baarsii SOR (mutant E47A) alone and in complex with ferrocyanide were solved to 1.15 and 1.7 A resolution, respectively. The latter structure, the first ever reported of a complex between ferrocyanide and a protein, reveals that this organo-metallic compound entirely plugs the SOR active site, coordinating the active iron through a bent cyano bridge. The subtle structural differences between the mixed-valence and the fully reduced SOR-ferrocyanide adducts were investigated by taking advantage of the photoelectrons induced by X-rays. The results reveal that photo-reduction from Fe(III) to Fe(II) of the iron center, a very rapid process under a powerful synchrotron beam, induces an expansion of the SOR active site.


==About this Structure==
Structure of superoxide reductase bound to ferrocyanide and active site expansion upon X-ray-induced photo-reduction.,Adam V, Royant A, Niviere V, Molina-Heredia FP, Bourgeois D Structure. 2004 Sep;12(9):1729-40. PMID:15341736<ref>PMID:15341736</ref>
1VZI is a [[http://en.wikipedia.org/wiki/Single_protein Single protein]] structure of sequence from [[http://en.wikipedia.org/wiki/Desulfoarculus_baarsii Desulfoarculus baarsii]] with CA, CL and FE2 as [[http://en.wikipedia.org/wiki/ligands ligands]]. Active as [[http://en.wikipedia.org/wiki/ ]], with EC number [[http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.2 1.15.1.2]]. Full crystallographic information is available from [[http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1VZI OCA]].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
Structure of superoxide reductase bound to ferrocyanide and active site expansion upon X-ray-induced photo-reduction., Adam V, Royant A, Niviere V, Molina-Heredia FP, Bourgeois D, Structure. 2004 Sep;12(9):1729-40. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15341736 15341736]
</div>
[[Category: Desulfoarculus baarsii]]
<div class="pdbe-citations 1vzi" style="background-color:#fffaf0;"></div>
[[Category: Single protein]]
[[Category: Adam, V.]]
[[Category: Bourgeois, D.]]
[[Category: Molina-Heredia, F.P.]]
[[Category: Niviere, V.]]
[[Category: Royant, A.]]
[[Category: CA]]
[[Category: CL]]
[[Category: FE2]]
[[Category: dinuclear iron cluster]]
[[Category: electron transport]]
[[Category: ferrocyanide]]
[[Category: microspectrophotometry]]
[[Category: oxidoreductase]]
[[Category: photoreduction]]
[[Category: redox states]]


''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Oct 29 21:45:19 2007''
==See Also==
*[[Superoxide Reductase|Superoxide Reductase]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Desulfarculus baarsii]]
[[Category: Large Structures]]
[[Category: Adam V]]
[[Category: Bourgeois D]]
[[Category: Molina-Heredia FP]]
[[Category: Niviere V]]
[[Category: Royant A]]

Latest revision as of 09:08, 9 May 2024

Structure of superoxide reductase bound to ferrocyanide and active site expansion upon X-ray induced photoreduction

1vzi, resolution 1.15Å

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