1bq5: Difference between revisions

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{{Seed}}
[[Image:1bq5.png|left|200px]]


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==NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS GIFU 1051==
The line below this paragraph, containing "STRUCTURE_1bq5", creates the "Structure Box" on the page.
<StructureSection load='1bq5' size='340' side='right'caption='[[1bq5]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1bq5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BQ5 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
{{STRUCTURE_1bq5|  PDB=1bq5  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bq5 OCA], [https://pdbe.org/1bq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bq5 RCSB], [https://www.ebi.ac.uk/pdbsum/1bq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bq5 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/O68601_ALCXX O68601_ALCXX]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bq/1bq5_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bq5 ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The crystal structure of the blue nitrite reductase from Alcaligenes xylosoxidans GIFU 1051 (AxgNIR) has been determined at 2.05 A resolution. AxgNIR contains both type 1 and 2 Cu sites, the geometry of the former being distorted tetrahedral. The superpositioning of the type 1 Cu sites in the blue enzyme and a green nitrite reductase revealed that the orientation of the Met150 side chain differed. The deviation of the Sdelta(Met150) atom from the axial position of the NNS plane formed by two Ndelta(His95 and His145) and one Sgamma(Cys136) atom caused the difference in the colors of the enzymes, i.e. blue and green.


===NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS GIFU 1051===
Type 1 Cu structure of blue nitrite reductase from Alcaligenes xylosoxidans GIFU 1051 at 2.05 A resolution: comparison of blue and green nitrite reductases.,Inoue T, Gotowda M, Deligeer, Kataoka K, Yamaguchi K, Suzuki S, Watanabe H, Gohow M, Kai Y J Biochem. 1998 Nov;124(5):876-9. PMID:9792907<ref>PMID:9792907</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1bq5" style="background-color:#fffaf0;"></div>


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==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_9792907}}, adds the Publication Abstract to the page
*[[Nitrite reductase 3D structures|Nitrite reductase 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 9792907 is the PubMed ID number.
== References ==
-->
<references/>
{{ABSTRACT_PUBMED_9792907}}
__TOC__
 
</StructureSection>
==About this Structure==
1BQ5 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BQ5 OCA].
 
==Reference==
<ref group="xtra">PMID:9792907</ref><references group="xtra"/>
[[Category: Achromobacter xylosoxidans]]
[[Category: Achromobacter xylosoxidans]]
[[Category: Large Structures]]
[[Category: Deligeer]]
[[Category: Deligeer]]
[[Category: Goho, M.]]
[[Category: Goho M]]
[[Category: Gotowda, M.]]
[[Category: Gotowda M]]
[[Category: Inoue, T.]]
[[Category: Inoue T]]
[[Category: Kataoka, K.]]
[[Category: Kataoka K]]
[[Category: Suzuki, S.]]
[[Category: Suzuki S]]
[[Category: Watanabe, H.]]
[[Category: Watanabe H]]
[[Category: Yamaguchi, K.]]
[[Category: Yamaguchi K]]
[[Category: Yasushi, K A.I.]]
[[Category: Yasushi KAI]]
[[Category: Cuproprotein]]
[[Category: Nitrite reductase]]
[[Category: Oxidoreductase]]
 
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Retrieved from "https://proteopedia.org/1bq5"