2vm9: Difference between revisions

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{{Seed}}
[[Image:2vm9.png|left|200px]]


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==Native structure of the recombinant discoidin II of Dictyostelium discoideum at 1.75 angstrom==
The line below this paragraph, containing "STRUCTURE_2vm9", creates the "Structure Box" on the page.
<StructureSection load='2vm9' size='340' side='right'caption='[[2vm9]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2vm9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dictyostelium_discoideum_AX2 Dictyostelium discoideum AX2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VM9 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
{{STRUCTURE_2vm9|  PDB=2vm9 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vm9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm9 OCA], [https://pdbe.org/2vm9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vm9 RCSB], [https://www.ebi.ac.uk/pdbsum/2vm9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vm9 ProSAT]</span></td></tr>
 
</table>
===NATIVE STRUCTURE OF THE RECOMBINANT DISCOIDIN II OF DICTYOSTELIUM DISCOIDEUM AT 1.75 ANGSTROM===
== Function ==
 
[https://www.uniprot.org/uniprot/DIS2_DICDI DIS2_DICDI] Galactose-binding lectin. May be necessary for the primary process of spore formation and may be involved in spore coat formation.
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2VM9 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM9 OCA].  
Check<jmol>
[[Category: Dictyostelium discoideum]]
  <jmolCheckbox>
[[Category: Aragao, K S.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vm9_consurf.spt"</scriptWhenChecked>
[[Category: Imberty, A.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Satre, M.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Varrot, A.]]
  </jmolCheckbox>
[[Category: Aggregation]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vm9 ConSurf].
[[Category: Cell adhesion]]
<div style="clear:both"></div>
[[Category: Ddr]]
__TOC__
[[Category: Lectin]]
</StructureSection>
 
[[Category: Dictyostelium discoideum AX2]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 08:14:35 2009''
[[Category: Large Structures]]
[[Category: Aragao KS]]
[[Category: Imberty A]]
[[Category: Satre M]]
[[Category: Varrot A]]
Retrieved from "https://proteopedia.org/2vm9"