3cp2: Difference between revisions

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{{Seed}}
[[Image:3cp2.png|left|200px]]


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==Crystal structure of GidA from E. coli==
The line below this paragraph, containing "STRUCTURE_3cp2", creates the "Structure Box" on the page.
<StructureSection load='3cp2' size='340' side='right'caption='[[3cp2]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3cp2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CP2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CP2 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3cp2|  PDB=3cp2  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cp2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cp2 OCA], [https://pdbe.org/3cp2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cp2 RCSB], [https://www.ebi.ac.uk/pdbsum/3cp2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cp2 ProSAT]</span></td></tr>
 
</table>
===Crystal structure of GidA from E. coli===
== Function ==
 
[https://www.uniprot.org/uniprot/MNMG_ECOLI MNMG_ECOLI] NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34.<ref>PMID:11544186</ref> <ref>PMID:17062623</ref> <ref>PMID:9603884</ref>
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_18565343}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 18565343 is the PubMed ID number.
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cp/3cp2_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_18565343}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
3CP2 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CP2 OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cp2 ConSurf].
 
<div style="clear:both"></div>
==Reference==
== References ==
<ref group="xtra">PMID:18565343</ref><references group="xtra"/>
<references/>
[[Category: Escherichia coli]]
__TOC__
[[Category: Meyer, S.]]
</StructureSection>
[[Category: Scrima, A.]]
[[Category: Escherichia coli K-12]]
[[Category: Versees, W.]]
[[Category: Large Structures]]
[[Category: Wittinghofer, A.]]
[[Category: Meyer S]]
[[Category: Cytoplasm]]
[[Category: Scrima A]]
[[Category: Fad]]
[[Category: Versees W]]
[[Category: Flavoprotein]]
[[Category: Wittinghofer A]]
[[Category: Nad]]
[[Category: Oxidoreductase]]
[[Category: Trna]]
[[Category: Trna processing]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 09:41:23 2009''
Retrieved from "https://proteopedia.org/3cp2"