2dua: Difference between revisions

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{{Seed}}
[[Image:2dua.png|left|200px]]


<!--
==Crystal Structure of Phosphonopyruvate Hydrolase Complex with Oxalate and Mg++==
The line below this paragraph, containing "STRUCTURE_2dua", creates the "Structure Box" on the page.
<StructureSection load='2dua' size='340' side='right'caption='[[2dua]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2dua]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Variovorax_sp._Pal2 Variovorax sp. Pal2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DUA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DUA FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=OXL:OXALATE+ION'>OXL</scene>, <scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene></td></tr>
{{STRUCTURE_2dua|  PDB=2dua  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dua FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dua OCA], [https://pdbe.org/2dua PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dua RCSB], [https://www.ebi.ac.uk/pdbsum/2dua PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dua ProSAT]</span></td></tr>
 
</table>
===Crystal Structure of Phosphonopyruvate Hydrolase Complex with Oxalate and Mg++===
== Function ==
 
[https://www.uniprot.org/uniprot/PPHA_VARSP PPHA_VARSP] Hydrolyzes phosphonopyruvate. Not active towards phosphoenolpyruvate, glycerophosphate, phospho-L-serine or phosphoglycolic acid.<ref>PMID:12697754</ref>
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_16981709}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 16981709 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/du/2dua_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_16981709}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
2DUA is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Variovorax_sp._pal2 Variovorax sp. pal2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DUA OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dua ConSurf].
 
<div style="clear:both"></div>
==Reference==
== References ==
<ref group="xtra">PMID:16981709</ref><references group="xtra"/>
<references/>
[[Category: Variovorax sp. pal2]]
__TOC__
[[Category: Chen, C.]]
</StructureSection>
[[Category: Herzberg, O.]]
[[Category: Large Structures]]
[[Category: Pep mutase/isocitrate lyase superfamily]]
[[Category: Variovorax sp. Pal2]]
[[Category: Phosphonopyruvate]]
[[Category: Chen C]]
[[Category: Phosphonopyruvate hydrolase]]
[[Category: Herzberg O]]
[[Category: Phosphorus-carbon bond cleavage]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 09:42:42 2009''
Retrieved from "https://proteopedia.org/2dua"