2rfm: Difference between revisions

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{{Seed}}
[[Image:2rfm.png|left|200px]]


<!--
==Structure of a Thermophilic Ankyrin Repeat Protein==
The line below this paragraph, containing "STRUCTURE_2rfm", creates the "Structure Box" on the page.
<StructureSection load='2rfm' size='340' side='right'caption='[[2rfm]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2rfm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_volcanium Thermoplasma volcanium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RFM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RFM FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=BU2:1,3-BUTANEDIOL'>BU2</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_2rfm|  PDB=2rfm  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rfm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rfm OCA], [https://pdbe.org/2rfm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rfm RCSB], [https://www.ebi.ac.uk/pdbsum/2rfm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rfm ProSAT]</span></td></tr>
 
</table>
===Structure of a Thermophilic Ankyrin Repeat Protein===
== Function ==
 
[https://www.uniprot.org/uniprot/Y1425_THEVO Y1425_THEVO]
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_18305166}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 18305166 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rf/2rfm_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_18305166}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
2RFM is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermoplasma_volcanium Thermoplasma volcanium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RFM OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rfm ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:18305166</ref><references group="xtra"/>
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermoplasma volcanium]]
[[Category: Thermoplasma volcanium]]
[[Category: Balbach, J.]]
[[Category: Balbach J]]
[[Category: Loew, C.]]
[[Category: Loew C]]
[[Category: Neumann, P.]]
[[Category: Neumann P]]
[[Category: Stubbs, M T.]]
[[Category: Stubbs MT]]
[[Category: Weininger, U.]]
[[Category: Weininger U]]
[[Category: Ank repeat]]
[[Category: Ankyrin repeat]]
[[Category: Protein binding]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 10:58:10 2009''
Retrieved from "https://proteopedia.org/2rfm"